Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421313.1:11535361-11551791[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.5e-05 0.0074 18.1 2.5 1 23 277 299 277 299 0.99

2 11 0.082 11 8.1 0.6 1 23 306 328 306 328 0.96

3 11 0.014 1.9 10.5 0.1 1 23 332 355 332 355 0.98

4 11 0.036 4.9 9.2 5.4 1 23 362 384 362 385 0.96

5 11 7.4e-07 9.9e-05 24.0 0.6 2 23 391 412 391 412 0.98

6 11 9.5e-06 0.0013 20.5 4.3 1 23 418 440 418 440 0.98

7 11 0.0002 0.027 16.4 1.5 1 21 446 466 446 471 0.93

8 11 0.00031 0.042 15.7 0.5 3 23 481 502 479 502 0.96

9 11 0.0058 0.78 11.7 0.0 1 23 508 531 508 531 0.96

10 11 0.0002 0.027 16.3 3.6 1 23 540 562 540 562 0.98

11 11 0.00015 0.02 16.7 0.9 1 23 568 591 568 591 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.5e-05	0.0074	18.1	2.5	1	23	277	299	277	299	0.99
2	11	0.082	11	8.1	0.6	1	23	306	328	306	328	0.96
3	11	0.014	1.9	10.5	0.1	1	23	332	355	332	355	0.98
4	11	0.036	4.9	9.2	5.4	1	23	362	384	362	385	0.96
5	11	7.4e-07	9.9e-05	24.0	0.6	2	23	391	412	391	412	0.98
6	11	9.5e-06	0.0013	20.5	4.3	1	23	418	440	418	440	0.98
7	11	0.0002	0.027	16.4	1.5	1	21	446	466	446	471	0.93
8	11	0.00031	0.042	15.7	0.5	3	23	481	502	479	502	0.96
9	11	0.0058	0.78	11.7	0.0	1	23	508	531	508	531	0.96
10	11	0.0002	0.027	16.3	3.6	1	23	540	562	540	562	0.98
11	11	0.00015	0.02	16.7	0.9	1	23	568	591	568	591	0.96

Sequence Information

Coding Sequence: atggatATAACTAGTATAGGTACCGAAGAAGATGTGAAACAAAGTTTTGAGCCGGCAAATGCAATTTGCAGGGGTTGTTTAACCACTAACCGTAAAATGATAAGTGCGGCGGTGTTCGGATCTTTATATAAAGATTTAACCGGGATTATTGTGACAGAATCAGATGGACTTTCACAATGGCTCTGCTATGAATGTTCAGCGATGCTCACAAAGTCTGTAAGGTTCCAACGGAAGATGTTGAAGGCCCATAACATTCTGTATCAATACTTGACGAGATGTGCACCGTTTCCTATAGATGCAAATGATGAAGAGCTTTCAAAGTACGCAAGCCCGTATCTGGCCCAGACTGTGACACTGTCTTGTGAAATCAGCAAAAGCAAGAAGAGCTCATATCAAGTTTTTGAGCATGAGAAGCAACCAAACAACACCGCCTTAGATGATAGCCAACTGCTGGACTTGCCCAAACCGGAGTCTGATGTCAAAGAAGAGATGGGCTTCTCCGACTATGATGATAACATCGCTTTGGAAGAGTTTCGGTCTACAGCCAATGAGATAACAGAAGAGGACATTGAATCTCTATTAAGACCTAGAACCCCTGCGGAGGTGGTTGAATCCGAAACCAAGAAGCAAAAGAAAACTAAGAAGAAAACCAAAGATAAGAAGAATAAAATAAGTGACGATGAAAAACCTGAAGCAGAGACCGGAACAAAGTCTTCTATCAGAAGAACTATTACTTTAGACCCGCAGAAGATAAGAATAATTACTTTGAACCCAGAAGAACAGATTAAGCAGAAAGaggagGAAGCACGGACGAATCTCAAGTTTCCATTCCAATGTAATTTGTGTCATAAGGGcttcaactttgaggcgaaatTAGCGAATCACATGAACAAACACAGTCCTTCCCGCGGTCCATTCGAATGCAAGCTGTGCCAGATGTATCTCCCTACTTCGTATAGCTTCAACGTCCACAGCCTGATCCACACGAGACGCTACGAGTGTGTGGACTGCGGCCGGAGGATGATCGATAGGGCTTCTATTATAGATCATTACAGGACGCAACATGAGGGCTTGTTGACACTTTTCAAATGCAATCTGTGTGGAAAGGTTTCAAATAATAATAAGACCCACAGGGGTCACATGAGGAACCATCACGGCGCAGACAGGCCCAAGTGTGACCAGTGCGGGAAGACCTTTGTCAACAAGGATTCTTTGACGGAACATCTTCAAATACACCAGGGTATCAAGAACTACGAATGTTCAATATGCGGTAAGAAGTTCCGGACACGAACCCAGATCAAGCATCACCAACTCAAACATACTGACGTCAAAGAGTTCTACTGCGTCGAATGTGATGTCAGattcaAATCTGCGCATAATCTTCGGCAACATTTACTAAAAAGTTTGAGACACAAAGACAAAAGAAGTTTTAtCTACGGCTGCAGCTCGTGCGACAAGCGCTTCGAGTCGCACTCGGGGCTGGCGGCGCACGTGCGCGTGCAGCACGAGGGCGTGCGCGCGCACCCGTGCGCCACGTGCGGGGTGGCGCTGGCCTCGGCCGCCTCGCTGGCCAAGCACGCGCGGACCGTGCACGCCGGACGACGAGCCGCGCCCAAACACGTGTGCCATACCTGCGGCCGACTCTTCCGGGGTAAGAGCGTGTTGACGAACCACGTACGCACACACACGGGCGAGAAACCATTCGAGTGTTCGTCGTGTGGTCGCAAGTTCTCGCAGCGCACGGCCATGAGGACTCACGTCAAGCTGGTCCACCTCAAGATGCGGAGACAACCCAAGgtaaaaCCCGAAATGCCCACCGAACAGATACCGCAAGCACCAAAGCTGGAGGTCTTCAAGCCGGACACTCCTTTGGAACCTTGGAGACAGCCCTGCGATGTCTACTTTCAGGTCACTGTACCTAAAGCATACAGCTAG
Protein Sequence: MDITSIGTEEDVKQSFEPANAICRGCLTTNRKMISAAVFGSLYKDLTGIIVTESDGLSQWLCYECSAMLTKSVRFQRKMLKAHNILYQYLTRCAPFPIDANDEELSKYASPYLAQTVTLSCEISKSKKSSYQVFEHEKQPNNTALDDSQLLDLPKPESDVKEEMGFSDYDDNIALEEFRSTANEITEEDIESLLRPRTPAEVVESETKKQKKTKKKTKDKKNKISDDEKPEAETGTKSSIRRTITLDPQKIRIITLNPEEQIKQKEEEARTNLKFPFQCNLCHKGFNFEAKLANHMNKHSPSRGPFECKLCQMYLPTSYSFNVHSLIHTRRYECVDCGRRMIDRASIIDHYRTQHEGLLTLFKCNLCGKVSNNNKTHRGHMRNHHGADRPKCDQCGKTFVNKDSLTEHLQIHQGIKNYECSICGKKFRTRTQIKHHQLKHTDVKEFYCVECDVRFKSAHNLRQHLLKSLRHKDKRSFIYGCSSCDKRFESHSGLAAHVRVQHEGVRAHPCATCGVALASAASLAKHARTVHAGRRAAPKHVCHTCGRLFRGKSVLTNHVRTHTGEKPFECSSCGRKFSQRTAMRTHVKLVHLKMRRQPKVKPEMPTEQIPQAPKLEVFKPDTPLEPWRQPCDVYFQVTVPKAYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824154;
90% Identity: iTF_00157444;
80% Identity: -