Dmen028379.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421323.1:6198212-6199662[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-11 2.8e-08 34.8 0.0 3 41 26 65 24 68 0.93
Sequence Information
- Coding Sequence
- ATGCGCCAAAAGAAGCTTTTACTTCAACAAATACTACCTATTATTGTACGACCCGGTTCAAAAAGATACACCGTTGAAACCCTTCAAAAAGCTTTAGATGACATACATCATGGGGTTTTGTCTGTTCACAAAGCAGcgaagaaatataaaataccaAACCAGACGCTATATgacaaaataaatcaaaaacatGTGAAGCAGCAGTTGCCAGGAGCACCAACTGTTTTGAAACCTGATGAAGAGGCGGCCGTCACCAAATGGATAATCCAAGTGACTGACATGGGTTTCcctgtaactaaaaaaaatattactcagTCAGTGACAAAATTGGTAACTGCATTAGACCGACCACTAAAATTTAGATTAGGATTGCCTGGTCGATCTTGGTATCAGAGTTTTATTAAGAGACATTCTATCCTAAAaggaaaagttttaaaaactttgAATTCAACTCGTACTGAAGTTACAGAAGAACAAATAAGAACATGGTTCAAACAAATTTCACAgaatattatacaaaataacatGCAGGATGTGCTTGAAGACCCATCTCGAATTTTCTATTGTGATGAGTCAGCATATTATATTGGTCCAAAAGGACAAGCCGTCCTAACCAGAAAGGatgagaaatatatatttaataaattcggCTATGATGAAAAAGAAAGTCTGACATTGGCCTTGGGTGCATCTGCGGATGGTAAATTAATGCCAACGTTAGCTATTTTTCCTTGTGAGACAATACCTGACATTGAAAAATACCCAGACACTTGGTCATGCGGTAGAAGCAAAAGCAGATGGATGACGTCTGaaaatttttatgaatatattaGTAACGTATTTAATCCAATTTTGATTAATGAAAATGTAAAGAAACCCGTAGTTATGTTTCTAGATGGTCATGTCACATACTTATCTCTGGAAGTTATTGAATTTTGTAATCGCAATGGAATAATTTTATTCGCTCTGATACCAAGTTCTACTCGCGTTACCCATCCACTGGATGTAGCAGTATTTCACCACTTAAAGGAATCGTGGAAGAAAGGTGTTGAAACTTGGCGGACCTTAAATGAGAGACGTATGAAAAGAGAAGACTTTGGGCCAGTTCTAGATCAATGCATTATTGAGACTTTGACACCAGAAATAATTCAAAATGGTTTTCGTCAATCTGGGTTATTTCCTTTTGATGAAAATGCCATAGATTACTCTAAAATCAGTACTACTTCTACATAA
- Protein Sequence
- MRQKKLLLQQILPIIVRPGSKRYTVETLQKALDDIHHGVLSVHKAAKKYKIPNQTLYDKINQKHVKQQLPGAPTVLKPDEEAAVTKWIIQVTDMGFPVTKKNITQSVTKLVTALDRPLKFRLGLPGRSWYQSFIKRHSILKGKVLKTLNSTRTEVTEEQIRTWFKQISQNIIQNNMQDVLEDPSRIFYCDESAYYIGPKGQAVLTRKDEKYIFNKFGYDEKESLTLALGASADGKLMPTLAIFPCETIPDIEKYPDTWSCGRSKSRWMTSENFYEYISNVFNPILINENVKKPVVMFLDGHVTYLSLEVIEFCNRNGIILFALIPSSTRVTHPLDVAVFHHLKESWKKGVETWRTLNERRMKREDFGPVLDQCIIETLTPEIIQNGFRQSGLFPFDENAIDYSKISTTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822849; iTF_01502017; iTF_00823844; iTF_01197650; iTF_00157145; iTF_00706879;
- 90% Identity
- iTF_00157145;
- 80% Identity
- -