Dfer005809.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- prdm10
- Assembly
- GCA_027564275.1
- Location
- JANSTW010040460.1:8559-11667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00076 0.047 15.0 0.3 2 23 112 133 111 133 0.95 2 10 0.098 6 8.3 4.4 1 20 171 190 171 194 0.89 3 10 0.0036 0.22 12.8 0.5 1 23 229 251 229 251 0.98 4 10 0.023 1.4 10.3 0.1 2 23 261 282 260 282 0.97 5 10 0.029 1.8 10.0 4.8 1 23 317 340 317 340 0.97 6 10 0.00021 0.013 16.7 2.6 1 23 345 367 345 367 0.97 7 10 5e-06 0.00031 21.8 0.7 1 23 373 396 373 396 0.92 8 10 0.0007 0.043 15.1 1.5 1 23 484 507 484 507 0.97 9 10 0.0001 0.0064 17.7 2.1 1 23 529 552 529 552 0.97 10 10 0.002 0.12 13.7 2.0 3 23 592 613 591 613 0.98
Sequence Information
- Coding Sequence
- ATGTGCTCAATACCGGAAATGCATCAAATTAAAACGGAAGCCATCAGCGACTGTAAACCATTTCCACTGCTGCTCATCGATCAATGTACGATTTTAGATGTGTCCAATGAATACACATCAAATTGGATGCGTTTTGTTAATTTAGCAAAAACATTTTCCGAGCAAAATTTACTCTTATATGAATCGGAGAAGAAAATTTATTTCAAAAGTTGTCAACTTATTCATCCGAAACAAGAGCTAAAGGTCGGCTACAGTCAAGAGTATGCCGAACAAAATGGTTTGCCATTTTTGCAACCAAACGACCAAGAAAAAGCTGCCATCTACGAACGTTGGCCATGTTTTGAGTGTGATAGAAAGTTTGAAACCTTTGAATTGCTACAAACTCATTTGAATGAACATGAAGATGAGAAACCAGCGGTAAAATCTCCTCGTAAAAACGGGCGACTGCGACGACGACGTGGCACCCGTACCCATTTATCGACGCGCAAAATTTCCGGTCCAACTGTTCGATATGCGTGCTGTTATTGTAGCAAAGTCTTTTCGAAATTTATTAGCTTCAAACGTCACAACGAATTTGCTCATTCGTCGGTTGATGGCAGCCAAGAACAACGACCAAATGTATCGTTAACAGCAGCGGCTGGCCCAATTTTACAAAATAGCAACAAAGAAAACCGCAATAAAGTATTTAAATGTGATTTATGCAGGCGATATTTTACAACTGCTGAAATTTTAGAGAAACATCTGTTAGTTCATTGTGCAACCGTTGATTCTAAACTAGTTCAATGTCAGTATTGTCCGAAGCGCGTTCTAACGCCTTCGGCGTTGGCAATGCACGTTAAAAGTCACATATTTAAAACTCGACGATTTAACTGTTTGTTTTGTTCGGACCGATTTGACTTGGCTACGGAAATTATGGCACATGTTAAAATTCACATGGAAAATGGTTTCTATCATTGTGAACACTGTAAAAAGAAATTTAAAGAATATGCAGTTGTGCGAAAACATGTCCGTTCAATTCACACAGCCTATCGTCATTCGTGCTCCGAATGTGGACGAGAATTTAGATCGTTAACGAAGTTAAAGGAACATCGTTTAAGTCACTCGGATATTCGAGAATTTCTATGCTCTGAATGTGGCAAACAATTCAAACGTAAAGATAAACTTCGTGCACACATTTTGGCAACTCATTATCCGAGATCAGACGACGAGGATGACGATGATAGTACAGCGCCTATAGTAGCTGCTGTTGCTAAGAATGAGAAAAAGGCTAAAGAAAAAATAGTTAAAAAGAAAAGGAAGACGGTGGATAAAGATCCAGTGAAAGATTCGTCTTATGTTGATGGACATTTTGAGCCACAACAAGAAGAACAAGAAATTGAAGCAAGCGAGTCGAATAAACCGACCAAATTTTTGGCCAAAGTAGCACCGACCGACTATCAACGTTTCATTTATAAATGTCACGATTGTCTGTTGGGCTTTAAACGTCGTGGCATGTTGGTCAATCATTTGGCTAAGAGACATCCGGACATTAGTATCGATTCAGTGCCTGAATTGAATTTGCCCATTTTAAAAGCTCAACGTTATTTCTATTGTCAATATTGCGACAAAGTCTATAAAAGTTCGTCAAAACGTAAGGCGCACATTTTGAAACTGCATCCTGGATTAGATTTACCAATGTCTTCGCATAAAGCGGCTGCCACTGTAAGCGAGCCGGGTGCACCGAATCCGGCCTTTTGTGAAACAGTTGGCAACGTTACAACACATCCCCAACTTTGTCCATGGTGCCATAAACAATATGCATCAAAACAACGTCTGATAAATCATCAACGTAAGATGCACGAAGATCAACTGAAAGAAATGGAAATGTCAATGCATCAGCATGAGAATCTCGATCTTTTGGATGACGTAATGCCTCAACAGCATCAACAAACGGCTATTGAATCAACAAATTACATAAACTCAcaacatccatctcagcatcatcatcatcatcaccagcatcatcaacatcattacatcgaatttgaacaaactgaaaataaattattaaaattatcgtcAGCTGCACTAGAAGCCTCACTACATGATGATTTTGATTTCTTTAATGAGAAACAACCGTCGACTAATGTTGATCAGCAACAAATCGGTGAAATAGCAACTGCGGGCCCAACATTATCCAAAGTCGATGTTAATTTTAAAGTTATCGGAGGAGATTTTATTGTGGATCCATCAACAGTTTCAAATGTTTTGCCACAACTTTTTGAAGAAATCGATTATATGTCTTTGAAATCGGTTGTGCCCACCGCAATTGATCAGCATCCGCAACAATATCATCATCATCATCAATACCATCAACGTGAAAGTACTGCAGCAATGAAGAAAATGAATAACTACAATTATTCACATCATAATAATGAAGGCGGATGA
- Protein Sequence
- MCSIPEMHQIKTEAISDCKPFPLLLIDQCTILDVSNEYTSNWMRFVNLAKTFSEQNLLLYESEKKIYFKSCQLIHPKQELKVGYSQEYAEQNGLPFLQPNDQEKAAIYERWPCFECDRKFETFELLQTHLNEHEDEKPAVKSPRKNGRLRRRRGTRTHLSTRKISGPTVRYACCYCSKVFSKFISFKRHNEFAHSSVDGSQEQRPNVSLTAAAGPILQNSNKENRNKVFKCDLCRRYFTTAEILEKHLLVHCATVDSKLVQCQYCPKRVLTPSALAMHVKSHIFKTRRFNCLFCSDRFDLATEIMAHVKIHMENGFYHCEHCKKKFKEYAVVRKHVRSIHTAYRHSCSECGREFRSLTKLKEHRLSHSDIREFLCSECGKQFKRKDKLRAHILATHYPRSDDEDDDDSTAPIVAAVAKNEKKAKEKIVKKKRKTVDKDPVKDSSYVDGHFEPQQEEQEIEASESNKPTKFLAKVAPTDYQRFIYKCHDCLLGFKRRGMLVNHLAKRHPDISIDSVPELNLPILKAQRYFYCQYCDKVYKSSSKRKAHILKLHPGLDLPMSSHKAAATVSEPGAPNPAFCETVGNVTTHPQLCPWCHKQYASKQRLINHQRKMHEDQLKEMEMSMHQHENLDLLDDVMPQQHQQTAIESTNYINSQHPSQHHHHHHQHHQHHYIEFEQTENKLLKLSSAALEASLHDDFDFFNEKQPSTNVDQQQIGEIATAGPTLSKVDVNFKVIGGDFIVDPSTVSNVLPQLFEEIDYMSLKSVVPTAIDQHPQQYHHHHQYHQRESTAAMKKMNNYNYSHHNNEGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -