Dfer005463.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010113442.1:14168-16281[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5 1.5e+02 3.9 2.4 3 23 247 268 245 268 0.92 2 10 4.8 3e+02 3.0 0.4 6 23 277 294 277 294 0.97 3 10 0.00099 0.061 14.6 0.2 1 23 300 322 300 322 0.94 4 10 0.0001 0.0064 17.7 2.0 1 23 330 353 330 353 0.97 5 10 3.3e-05 0.002 19.3 0.4 1 23 361 384 361 384 0.96 6 10 0.0025 0.15 13.4 1.5 2 23 391 412 390 412 0.95 7 10 0.028 1.7 10.1 0.9 2 23 421 442 420 442 0.97 8 10 0.00045 0.028 15.7 0.8 3 23 449 470 448 470 0.97 9 10 0.00014 0.0088 17.3 0.9 1 23 475 497 475 497 0.97 10 10 0.00047 0.029 15.6 4.6 1 23 503 526 503 527 0.97
Sequence Information
- Coding Sequence
- ATGAGTGATTCTAAATTATGTAGGCTATGTTTAATAGAAACGGACTGCGCTATTGATATATTTGGCGAAGATGGCAATAGTCTAGAAATTGCAATAATATTAGCACAACATTTTTGGTTTCAGGTCTGCGAAGACGATGGATACTCACCGAACATTTGTGTTAAATGTTGGCAAGATACGGAAAACTTTCATGAATTTTACAAGAAAATTGAGAATATTCAAAAGGATTATCATAACAACATAGTAATTAAAACACCTAAAATAAATAAAAGTAATAAAAAGATAAAATTGGAACCAGTGGAAGAACAATTAATTAGTGATAAAAACAAATTGGAGATACAGAGCATTTTTGAGAATACACCACCCGTGCTAGGGGAGTCGAAAATCGAAACATTTGAAATCATTACCGGCGATGTAATAAAGAATGACAAATCAGATAATTCAGATGATGAATTTGATGCAAATGACTGCAACGAAGATTGGGTAAAGCATGAAGAAAGTGCCGATCAAAACAGTGAAGAAGACGAAGAAGAAGATTCATCATCTGACTATGTAGTGAAATCTGAATTAGGAAGAACTAAAAAGTCGCCGAGAAAGCGAAAAGCGAAAAAAAATAAAGCAGAAGATGTTGTCGGCGATGTCAACAATTCTGAAGATGGCACAAAATCACCTAAGAAGAAACCTAAAAGGGATACACTGAAAGAGGATGAACAAATACGAGAATACTTTAACATGGACTGTGATATGTGCAATACGAAATTTGATACATTTTTAAAAGCAAAACATCATTATAGTCGAGTACATAAAGTTGATGGTTACATAACGTGTTGTGGTAAAAAGTTTTTAAGAAAGTATCGAATCTTGGAGCATATTATGCGACATGTTAATCCCAATGAATTCACATGTCTTCCATGTGATAAAATATTTGCCGATAAATTTGCACTAAAAAATCACATCGAAAATCATGAACCAGTTGATACCAGACAGCATAAGTGTGATTTGTGTCCAAGTACTTTTACAAAAGCATCAAAATTAACATCTCATTTACGAATAAACCATATTTCTGAAGAAGATAAACAATTTAAATGCGATCAATGTAACAAAAACTTTGCAACAAAAACGGCTCTAGCCTATCATGTTCGTGGCGTTCATGAAAATGCATTTGTGCAAGTGTGTGACATTTGCGCAAAGGTCTTTAAAAGTAAACATGTCTTTCAAAATCATCGTCTAGAACATTCAGATGTCGTTCGTCCCAGAATGCAGTGCAATGTTTGTGGAGCATGGCTAAAGCACGAAGAAAGTTTACGAAAACATTTACAACGCCATAAAGATACATTTGCTAATTGCCCAATTTGCAATAAAGTGTTACAGAATAAGCATTCGTTGGGCAATCATATTCGTAGCGTGCATGGCGAACGATCtcataagtgtacaatgtgcgataaagcctttaaaaaagctattgtattaaaggaacatatggccttacatactggcgaagacttgtataaatgtgcatattgtccgaaaacttttaagtctggtgcaaatatgcatgctcatcgtaaaaaatctcatcatgacgaatggTCTGTAGATCGTTTAAAACGTTTTACACCAAATCCAACAAAAATAGATGAAACTCCCGATACTATAGTTTTTTAA
- Protein Sequence
- MSDSKLCRLCLIETDCAIDIFGEDGNSLEIAIILAQHFWFQVCEDDGYSPNICVKCWQDTENFHEFYKKIENIQKDYHNNIVIKTPKINKSNKKIKLEPVEEQLISDKNKLEIQSIFENTPPVLGESKIETFEIITGDVIKNDKSDNSDDEFDANDCNEDWVKHEESADQNSEEDEEEDSSSDYVVKSELGRTKKSPRKRKAKKNKAEDVVGDVNNSEDGTKSPKKKPKRDTLKEDEQIREYFNMDCDMCNTKFDTFLKAKHHYSRVHKVDGYITCCGKKFLRKYRILEHIMRHVNPNEFTCLPCDKIFADKFALKNHIENHEPVDTRQHKCDLCPSTFTKASKLTSHLRINHISEEDKQFKCDQCNKNFATKTALAYHVRGVHENAFVQVCDICAKVFKSKHVFQNHRLEHSDVVRPRMQCNVCGAWLKHEESLRKHLQRHKDTFANCPICNKVLQNKHSLGNHIRSVHGERSHKCTMCDKAFKKAIVLKEHMALHTGEDLYKCAYCPKTFKSGANMHAHRKKSHHDEWSVDRLKRFTPNPTKIDETPDTIVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -