Dfer024484.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010058862.1:1508-2980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3 2.1e+02 3.5 5.7 1 23 31 54 31 54 0.81 2 11 3.6e-06 0.00022 22.3 2.1 1 23 163 186 163 186 0.98 3 11 0.0042 0.25 12.7 2.3 1 23 214 237 214 237 0.97 4 11 0.00075 0.046 15.0 0.5 1 23 256 279 256 279 0.97 5 11 3.7e-05 0.0022 19.1 1.4 1 23 287 309 287 309 0.99 6 11 0.00016 0.0097 17.1 2.9 1 23 316 339 316 339 0.97 7 11 0.00021 0.013 16.7 1.6 1 23 345 367 345 367 0.98 8 11 0.0045 0.28 12.5 8.3 1 23 373 396 373 396 0.98 9 11 0.0014 0.087 14.1 1.0 1 23 403 425 403 425 0.97 10 11 0.00053 0.033 15.5 0.7 1 23 431 453 431 453 0.97 11 11 0.0015 0.091 14.1 0.2 1 19 458 476 458 479 0.85
Sequence Information
- Coding Sequence
- ATGTATTTTCAATTGGATTTAACGTCAACTCATCCAATTCAATCAAAATGTGCAGAAATATTCCGAAATGCCGATACGGGTCAATATTCTTTTCTGTGCTTTCATTGTGGCAAATGTTTCCACTTTTTTATCGATATTTCCGATCATATTGAGCAAAATCATAGTATAATATTGGATAATATTAAGGTTGAATCGATGGAGACCGGAACAGAATTAATAAAAATTGAATTCTGTGGCGAACAAACTGTAGTGGATCCTCTGAATGAAAATGAATCGTTGGTAAACCATATAAATGTTGCAAGTACCGAGGATAATGATAATGAACATGAATCGTTGGTAAACCATATGAATGTTGTAAGTACCGTGGATAATTCTGAAAAGGATACATTTTTAAAGGGAACTAATTTAGAAGAAATATTAAAAAGTGAAGATCAAGTTCAACATAACGTGAACGATGTTTCTGATGCTGACAGCCTGGATAAACCGTTCAAATGTACCATATGTGGTCGTTCCTATGAAGTGAAAAAATCTTTTCGAAATCACATGCGCATCAAACATTCGATTTTTGTATCAAGAAAATTAAAAAAGGAAAAGAAAAGAATTAAGATTGCTCCAAATATTGCTGACAAACCCGAATCATTTCAATGTGACCGTTGTAGTATGAGATATGACACATCTAAATCGTTATACGAGCACTTACGAAACAAACATGGAATCTATCAAACTGGTTTTTCGATCGCTGCAGATGAGACAGTCGACCAAATTTTCAAATGTACAGCTTGCGGTCGAGCCTACAGTAGTAGATTGAAATTGATTGATCATTTGCGAGAGCGACATAATATTTATCAGAATTGTGACTATAAATGCGACATTTGTGGGAAGAATTTTCAGAGTAAACTCTCTATTTTAAAGCATCTACGTAGACATCAACCAAAAATAAAAAACTTCAAATGTACGCAATGCCACCGGGCCTACGAACAACAATACCTTTTGAAGCTGCACATTGAGCGGCAACACACCAATGTAAAACCATACAAATGTGAATTGTGTGAACGAAGATATAGCAGCCGTTATACGCTATCTGCTCACAATCGCCTGCACAGCGGTGACAATATCTATCAATGCTTTCGCTGTGGCGAATGTTTTCACACCAAAAATTACCTGAACACTCACACCAAGCGGACGCATCTTTATGCGGAAAGGCTGTTCAAATGCACATCGTGTGACAAGAGATTTTTCACGGGATATGCCCTAAAGATGCACGAAATTATTCACAGTGGTTTGcgaccattcgaatgtgagcactgcggcaaaatgttcgccgccatgaaagtgttgcgaaatcatcggctaatacacttggaaaaacgttatgagtgcaaaatatgcggcaaaaaatttgCCCAATCGGCAGGACGGCGGGGACATGAGAAAATCTGCCCAATTAAAGAATTTAAATCCAATTCTAATTAA
- Protein Sequence
- MYFQLDLTSTHPIQSKCAEIFRNADTGQYSFLCFHCGKCFHFFIDISDHIEQNHSIILDNIKVESMETGTELIKIEFCGEQTVVDPLNENESLVNHINVASTEDNDNEHESLVNHMNVVSTVDNSEKDTFLKGTNLEEILKSEDQVQHNVNDVSDADSLDKPFKCTICGRSYEVKKSFRNHMRIKHSIFVSRKLKKEKKRIKIAPNIADKPESFQCDRCSMRYDTSKSLYEHLRNKHGIYQTGFSIAADETVDQIFKCTACGRAYSSRLKLIDHLRERHNIYQNCDYKCDICGKNFQSKLSILKHLRRHQPKIKNFKCTQCHRAYEQQYLLKLHIERQHTNVKPYKCELCERRYSSRYTLSAHNRLHSGDNIYQCFRCGECFHTKNYLNTHTKRTHLYAERLFKCTSCDKRFFTGYALKMHEIIHSGLRPFECEHCGKMFAAMKVLRNHRLIHLEKRYECKICGKKFAQSAGRRGHEKICPIKEFKSNSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -