Dfer004637.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010094301.1:5354-8095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.2e-06 0.0005 21.2 1.7 2 23 192 214 191 214 0.97 2 10 6.9e-06 0.00042 21.4 3.0 1 23 250 272 250 272 0.98 3 10 0.0019 0.12 13.7 1.3 1 23 279 301 279 301 0.98 4 10 0.0002 0.012 16.8 0.9 1 23 386 408 386 408 0.97 5 10 0.0092 0.57 11.6 0.9 1 23 423 445 423 445 0.98 6 10 2.9e-05 0.0018 19.4 2.3 2 23 454 475 454 475 0.98 7 10 6e-05 0.0037 18.5 0.7 1 23 481 503 481 503 0.97 8 10 0.00053 0.033 15.5 0.7 1 23 510 532 510 532 0.98 9 10 0.00038 0.023 15.9 1.9 3 23 543 563 541 563 0.96 10 10 8.9 5.5e+02 2.2 0.2 1 13 567 579 567 589 0.79
Sequence Information
- Coding Sequence
- ATGGATTGGAAAATAAATAGAATTTGTTTGATGGAGATGTGTCGAATATGTTTGCAGAATATGAATGATGAAGCTGGCGGTTCGACCGACATAATGAAAACGACCATAGAATCATTGAATATATCACTTTTCGATTTGTTTCGGGCATTTACTGCTCTTCCAGTAGTAGTGGACCAGCAAAATATGGAAGGATTTCCAACGCAAATTTGTACAAATTGCCTAAGGACCTTAGTTTTGGCCTATGAATTTCAATTGAAATGCATTGAAAGTGACCAACGCATTCGTATGGTTTTGGAATGTTCGAGCTCACAAGAATCTGCTAACATTGACGAAGATAAGTTTGAAATACCAAATGATGACCCTATTAAAACGGAAATGGATAATTCCATATTTTTGGAAGAGCATTTTGTTGTGGATAGTTATGTGAACACTACTGCTACAGCTGTTAAAGATGAAGAAGAATCTATTGATGAAGAGGTACCAGCAAAAGAAATTGACTATGAATCAGATGAACAAATTGGTAATAAGGATGCCTCTAATAAAGTACGTAAAAAATGTAAGGATAAGATAGTCAAATGCGAGATTTGTAGCAGAACATTTAATAAACGTTATAATTTGTTGCGACATTTGAAAAAAATTCATAAATCTGAAGAGCTTCCAAAAAGAGCTGATGAGATTGAAGATGAATCAGAAGAACAAAATGAAAATATAGACAATGAGGATTCTTCTAATAAAACACGTAAGAGATTCAAATGCCAGGTTTGTAGAAGAACCTTTAATAAAAGTTATAATTTGTTGCGACATTTGAAAGTTCATGGTACTGAGGGTAAACCATTTGAATGTAAATTTTGTAAAAGACGATTTGCCGAAGAAAGTCTTATGATTACTCATCAAAATAATCATAGTGCAGATGATTTGCGACAGTTTGATAATAAAGACCTTTTAACAGATGATGATGACGATGTTGATAATGAAGAAATAATGAAatataagaaaaagatatacaaatACGCAGACCTGGCCGACAGTAAGACTACTACTGATCCAAAGACACTTGAAACTTTTGACGAACGGCCTAAAAGTGAAGAATTGGCAACTAGTCAAACCGAACTGGAAATTCACTCTAAAGTACACGAAACAGCTGATGGTAAACCATTTCAATGTAAAGTTTGTAACAAACAATATGTTAAAGAGGACTATTTGATTCGCCATGAAATGAATCATACAAACGATGTATTCGATTATAAAATAGAACAACCAACACTTTATCAATGTACCGAATGTCCACGACAATTTTTGAATGAAAAAAAGCTTTCAGTGCATAAAAGAGCTCATCGCTATATGCAAAACTCTGGCCGAACTTGTGACTATTGTGAAAAAACCTTTTTTAAAATATTCAATTTAAAGCGTCATATGAAAATCCACTTGACTCCTAAGCTATACAGTTGCAAACAATGTGATAAGACATTTACAGACCTTTTAGAACTGGCGGAACATCGGAAAGATCATAGCGATTCAGAGAAACCTTATGTTTGTTCGGTGTGCAACAAGGGATATTATAAATTGTCGGCGCTAGAGTATCACAGGCTTAAACATGAAACAGTTGAAACACCAGCTCATCATCTGTGTTCTGTATGCGGAAAATCATATGGCACTGTGCAAAACTTGAACAACCATTTCAAAACACACTATAAACTATTTCAGTGTTCGATATGTTCGCTTCGACTGATATCTAAAGAACTGAAATTTCATTTGGAGCAACACTATTTGCCACAGTTAACAAGTAATCCTGATCTGGATTATGATGCACTGCTATTCAAATCAACGGCTCATCAAAAACTATAG
- Protein Sequence
- MDWKINRICLMEMCRICLQNMNDEAGGSTDIMKTTIESLNISLFDLFRAFTALPVVVDQQNMEGFPTQICTNCLRTLVLAYEFQLKCIESDQRIRMVLECSSSQESANIDEDKFEIPNDDPIKTEMDNSIFLEEHFVVDSYVNTTATAVKDEEESIDEEVPAKEIDYESDEQIGNKDASNKVRKKCKDKIVKCEICSRTFNKRYNLLRHLKKIHKSEELPKRADEIEDESEEQNENIDNEDSSNKTRKRFKCQVCRRTFNKSYNLLRHLKVHGTEGKPFECKFCKRRFAEESLMITHQNNHSADDLRQFDNKDLLTDDDDDVDNEEIMKYKKKIYKYADLADSKTTTDPKTLETFDERPKSEELATSQTELEIHSKVHETADGKPFQCKVCNKQYVKEDYLIRHEMNHTNDVFDYKIEQPTLYQCTECPRQFLNEKKLSVHKRAHRYMQNSGRTCDYCEKTFFKIFNLKRHMKIHLTPKLYSCKQCDKTFTDLLELAEHRKDHSDSEKPYVCSVCNKGYYKLSALEYHRLKHETVETPAHHLCSVCGKSYGTVQNLNNHFKTHYKLFQCSICSLRLISKELKFHLEQHYLPQLTSNPDLDYDALLFKSTAHQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -