Dfer018275.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010116552.1:7039-18767[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 1.6 10.2 1.2 2 23 381 403 380 403 0.94 2 12 0.65 40 5.8 0.8 1 14 409 422 409 427 0.85 3 12 2.4e-06 0.00015 22.8 1.0 1 23 440 462 440 462 0.98 4 12 0.015 0.91 10.9 0.5 2 23 510 532 509 532 0.96 5 12 0.0003 0.018 16.3 2.0 1 23 564 587 564 587 0.96 6 12 0.00041 0.025 15.8 0.7 1 23 595 618 595 618 0.98 7 12 0.11 6.7 8.2 0.3 1 11 627 637 627 649 0.81 8 12 0.0033 0.21 13.0 1.2 3 23 657 678 655 678 0.94 9 12 8.1e-05 0.0049 18.0 2.4 2 23 686 707 685 707 0.97 10 12 0.00079 0.049 14.9 0.1 2 23 713 735 712 735 0.97 11 12 0.00045 0.028 15.7 0.7 2 23 741 762 740 762 0.96 12 12 0.00062 0.038 15.3 3.3 1 23 768 791 768 791 0.97
Sequence Information
- Coding Sequence
- ATGAATCAAGATATTCCCATAAAGATGGAACCATCAGAAGAGTTGGATGGTATTGATGCATCTACAATCGGAGGAAGCAACTTGGATTATTCGAATATTACTATTAAAACGGAACCAGATGATGACCTAGATAATACACCTGAAAGCAATTTGGACTATTCCAATATTACCATTAAGTTGGAACCACAAATATTTTTAAATGACACAACCAGCGATAATTTAATTGTAATATTAAAGTCATCCAATACGTTGCTTCCTCTGTCGCTGGTTGTAACTGTGTCATTTATAAATATTTCTGGTTCCATCTTAATGGTAATATTGGAACAGGCCAAATTGCTTTCTCTGTCACTGATTGCAGGTGTGTCATCAATATTCCATTCTGGTTCTGTTTTAATGAACAAGGATCTACTTCTAAACCTCTTTGTGGGAGCTGAGACGATTATGGTTCCAGCATCACAGTGCCAACAGTTGTGTCGATTATGTTTAAGCAAATCTGAAGCTCCTCCGATTAATTTGTATCACAGAGAGACCAAAGAACTCACCCGAAATGGTCTGATATTAAAGCAACACTTTTGGTTTGATTTTGGGGTTAATTGCACCAAAGACTCATTATCGGCGATAATCTGTCCCAAGTGTTGGTCGTACATTGAACAATTTGATCAGTTCTACAATTTGATAAAGGACAAACATCAAGAATACTATGGCGATAGTATGCACTGTACAGTGGAAGACGATAGAATCGTTGTACGGTACGATATAAAAAGAGATGCGAGCTTTCTTCGCCGTCGAATTGTAGCTGCTGACGTAAAGGAAGAACCAATTGATATTTCTACTGTAGCTGAACTCTCGGATCATGTAATTGCAATTCCGTTCAGAGTTTTGGAAGAAGTCGATAATAATTGTAGCAATGACAACATAAAGGAAAGTGCAGATGAATCTGGTTCAAGTGATGACTCGACTGCAGAAGAGTGTATAGGTAAACCATCTGAAACAATGAATGCGAAATTCTCTGACAAAAACCCATCACTTATTACAAATCAGCAAGACAAAACGATTCTTACTAAAGGTGAAACATTACGCGAACAATTGGACGAGACAGGTGCAGCTGATGTTGAATTAATTCGAAAATATTTTCTAATGGAATGTGATAAATGTGAACATTCATTTAATACATACTCAGATGCAACATTACATTATCAAAATGTTCATAATTTAGAACCGACTTATTTGTGCTGTATGTGTGATAAAAAATTCAGCGATCTGAGCATAATTACTCAACATTGTGTATGGCATGAAAATCCAAGTACCTACAAGGGATTTATTTGCGACATTTGTGATAAAACTTTTAAAGCAAAGTCCAGTTTAAAGATGCACCTAATGAGGCATGTTAAAGCTGTCATAGAACTTGGCCAGACTGAAAAAAAGACTAATCGTCGTAACAAACGAAGAAAATCTAAAAAGACCAATAGAACACACGAAGAAAGTGCCGAAGAACAAATTGCAATGCTAAAACATCAATTTAAAATGGAATGCGATATTTGTGAGGAAAAATTTGAAAATTTTCGACAAGTTAAAAGTCATTTTCGAATGGTCCACAAACAAAGTGGATATTTGGTATGTTGTAAAAAGAGATTTCTTCGAATGCTGCTGGCAATCGATCACTGTAAATGGCATGGAAATCCGGATTTATTTAAATGTAAGGAATGTTCAAAATCTTTTATGGATAACATTGCCTTAGAATATCACATGTCTCATATGCATACGCCCGACGATCAAAGACAATTTAAATGCGACCTCTGTCCACGAACCTTTGCTTTGGAGCGAAATTTGAGGGGTCATCGGAAGAAAGTGCATTTCAGTAAACGAGATGAGAAAATTCACGAATGTCCCATTTGTGGCAAAAAATATTCCTTACTAACTCTACGCTTTCACATCGAAAATGTGCATGACAATAGGCATGCCCAAATATGTGACATTTGTGGCCGATCATTTAAATCGGTCAAGTGCTATGAAATGCACTATTTGTCGGAACACACAAATGTCGATCAGAAGGTCCAATGTGATTTGTGTGGCAAATGGTTTAAACATCAAGATGGCTTAAAACATCATATGCGAGCTCATAAGGCTCCGACGAGTCAATGCAAAATTTGCGGACGCATTTCACCCAATAAGGCCGCGACACGAGCACACATGAGATCGGCGCACCGGCCGGCCTCTCTGAAATGTACAGTTTGTGCAAAAATGTTCAAAAACAATACAACACTAAAAGAACACGAAGCCATGCACTTTGGCATTAATTTGTACAAATGTTCGTTTTGTTCGACAACATTTCGGTCTAGCGCCAACATGTACAAACATCGTAAGCAGGCACATCCGGTCGAATATGCCGAACACAGAACGGCGCCAAAAGGTTCGGCAATGTTGAGAGTAGCTTCGGACACGGCCGGCAGTAATGTGAAATGTTTGTCGGAGGACGATTCGCTGTGA
- Protein Sequence
- MNQDIPIKMEPSEELDGIDASTIGGSNLDYSNITIKTEPDDDLDNTPESNLDYSNITIKLEPQIFLNDTTSDNLIVILKSSNTLLPLSLVVTVSFINISGSILMVILEQAKLLSLSLIAGVSSIFHSGSVLMNKDLLLNLFVGAETIMVPASQCQQLCRLCLSKSEAPPINLYHRETKELTRNGLILKQHFWFDFGVNCTKDSLSAIICPKCWSYIEQFDQFYNLIKDKHQEYYGDSMHCTVEDDRIVVRYDIKRDASFLRRRIVAADVKEEPIDISTVAELSDHVIAIPFRVLEEVDNNCSNDNIKESADESGSSDDSTAEECIGKPSETMNAKFSDKNPSLITNQQDKTILTKGETLREQLDETGAADVELIRKYFLMECDKCEHSFNTYSDATLHYQNVHNLEPTYLCCMCDKKFSDLSIITQHCVWHENPSTYKGFICDICDKTFKAKSSLKMHLMRHVKAVIELGQTEKKTNRRNKRRKSKKTNRTHEESAEEQIAMLKHQFKMECDICEEKFENFRQVKSHFRMVHKQSGYLVCCKKRFLRMLLAIDHCKWHGNPDLFKCKECSKSFMDNIALEYHMSHMHTPDDQRQFKCDLCPRTFALERNLRGHRKKVHFSKRDEKIHECPICGKKYSLLTLRFHIENVHDNRHAQICDICGRSFKSVKCYEMHYLSEHTNVDQKVQCDLCGKWFKHQDGLKHHMRAHKAPTSQCKICGRISPNKAATRAHMRSAHRPASLKCTVCAKMFKNNTTLKEHEAMHFGINLYKCSFCSTTFRSSANMYKHRKQAHPVEYAEHRTAPKGSAMLRVASDTAGSNVKCLSEDDSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -