Dfer000053.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010042982.1:4938-6719[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.28 17 6.9 1.0 1 17 39 55 39 62 0.83 2 14 0.0004 0.024 15.9 1.4 2 23 77 99 77 99 0.95 3 14 0.038 2.3 9.6 0.4 2 23 106 128 105 128 0.89 4 14 0.065 4 8.9 3.4 1 23 136 158 136 158 0.95 5 14 2.4e-05 0.0015 19.7 1.7 3 23 167 187 167 187 0.99 6 14 0.0023 0.14 13.5 3.9 1 23 193 215 193 215 0.96 7 14 3.7 2.3e+02 3.4 4.3 2 23 353 374 352 375 0.94 8 14 0.076 4.7 8.7 2.5 1 19 386 404 386 409 0.93 9 14 1.5 94 4.6 0.3 1 22 418 439 418 441 0.88 10 14 2.6e-05 0.0016 19.6 3.2 1 23 449 472 449 472 0.94 11 14 4.3e-05 0.0026 18.9 2.1 1 23 482 504 482 504 0.96 12 14 1.6e-05 0.00097 20.3 0.4 1 23 510 533 510 533 0.97 13 14 4e-05 0.0024 19.0 0.7 1 23 539 561 539 561 0.98 14 14 0.00047 0.029 15.6 0.3 2 23 569 591 568 591 0.96
Sequence Information
- Coding Sequence
- ATGGAGATAATAAGGGACTATCTTAACGAAGAAGATGATTGTGACGAAAGCGATAATAAAATCAAAGAAATTATAAAAACCGAAATTCATGACAAAAAGCCAGAAATTACAACTTATCAGTGTAGTTTATGTGGTGAGAAATTCTTGTCGAAAATCAACTTACAATTTCATAATAATTTTGATCATAAAATGCCATTCGAGCAAGTGCAAATATCAGGGAATCCTGGCTACTGTTCAATATGCAATCGGTTTTATAAAACGCAAATGGACCTAGAAACTCATCAAATGTATAAACATAAGTTGGTTAACCCCTTAAGATGTTCAATATGTGGTCACATTAGTAAAGATAACAGTCAAATGTTAGAACACGTCGATGAAACACATTATGACATATTCATAAATAAATATAAATGTTTAAAATGCAGCGAATCGTGCTCGAACTTACAAAAGTTAGACAAACACTTATTTGCCCATATTCAGTTAATGGAAAATACTGGGTGTAAAATTTGCGAGAAAACCTTCCGAACAGAGTTCACTCTCCAAAACCATATATCCACGCATACAATAGATAAGCATTTCTTCTGTAAATTTTGCAGGAAAGGATTTGACAATAAAACCAATTTTCGAGATCATTTACTTTATCATATACAAAATGCAGTAGAAGCATTCCCTTCAGACGATGAAGACGCAGAGAAATATTATCAGCCAATCGTTCATGATACAGCAGCAGTTACAAATGCATCTGCTGAACACTCAATAACAATGTCTACAGCAAATATTAAAAAGGAATTTTCTGTAAAGAGTCTGTTTAAATTTTCATCAAAAAACTCTGTTGACACATATGAGGAGGATTTTGACGAAATTCCATCCGAATTGGATGTGGCAAGCGAAGACGACGTTGCCTTTTATGCGGAACTTAGTCATTATTTTCCCACTACAGCATCGAAAATAAAAAATGAATTATTTTCGTCGGATGAAGAGTCCGATGGAAGTAATTACTCCACAGACAATGATTTTGATTTTAATAAAAACACATTGCCTGATAATTTACAATTAAAATGTAGTAAGTGTCTTCGTAAACAGAACACATTTTCCGGATTTAATTTGCACATTAAAACTCATCACGGTGATGATTCAATAAATACAAACAAAACATTTTACTGTGGGCTTTGTGTAAAAACATTCAAAACTAAATTAGAATGGAAGAAACATTGCCTGGCAGTCCATCTACACCGTAAGCAGAAAGTAGTGTTTAAATGTCGAGCATGTGATATGCCATTTGATTTTACAGAAGATCGAAAAAGACACGAAATTGATGTCCATGTCAATAAGGAAACATCAAGATTTGATTGTACACAATGTGATAAGACATTTATTCAAGCACATTATCTAAGAACGCACATGCAGTTTTCTCATAATAACGATGAAATGGGTTTGTCGAAACACATATGTCAGGAATGTGGCAAAATATTTGCAAAGAAGCAATATCTAAACAATCATTTCCGAATACATCAAAGCGATCAGACTTATGAATGTACGATTTGTAGCAGGTCATTCATTAGAAAGGAAGCCTTAGTTTATCATCTTAAAGTTACTCACAGTGAGATACGTCGATACAAATGCGATAAATGTCCAGCAGCATACAAGGAAAGTACAGACTTAAAACGACACATGTATAGTCATGGTGGTTTTGAAAAAACTGTAGAATGTACGATGTGCCCAGCGAAATTCTATGATAACCGAGGATTACGTGTACATATGAAATATACACATAAATATTAA
- Protein Sequence
- MEIIRDYLNEEDDCDESDNKIKEIIKTEIHDKKPEITTYQCSLCGEKFLSKINLQFHNNFDHKMPFEQVQISGNPGYCSICNRFYKTQMDLETHQMYKHKLVNPLRCSICGHISKDNSQMLEHVDETHYDIFINKYKCLKCSESCSNLQKLDKHLFAHIQLMENTGCKICEKTFRTEFTLQNHISTHTIDKHFFCKFCRKGFDNKTNFRDHLLYHIQNAVEAFPSDDEDAEKYYQPIVHDTAAVTNASAEHSITMSTANIKKEFSVKSLFKFSSKNSVDTYEEDFDEIPSELDVASEDDVAFYAELSHYFPTTASKIKNELFSSDEESDGSNYSTDNDFDFNKNTLPDNLQLKCSKCLRKQNTFSGFNLHIKTHHGDDSINTNKTFYCGLCVKTFKTKLEWKKHCLAVHLHRKQKVVFKCRACDMPFDFTEDRKRHEIDVHVNKETSRFDCTQCDKTFIQAHYLRTHMQFSHNNDEMGLSKHICQECGKIFAKKQYLNNHFRIHQSDQTYECTICSRSFIRKEALVYHLKVTHSEIRRYKCDKCPAAYKESTDLKRHMYSHGGFEKTVECTMCPAKFYDNRGLRVHMKYTHKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -