Dfer005394.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- topi
- Assembly
- GCA_027564275.1
- Location
- JANSTW010054370.1:1409-3178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0039 0.24 12.7 2.3 1 23 112 135 112 135 0.95 2 15 1.5 90 4.6 0.9 2 23 143 166 142 166 0.89 3 15 0.29 18 6.9 0.6 1 23 190 213 190 213 0.94 4 15 3.4 2.1e+02 3.5 0.3 5 23 224 244 220 244 0.80 5 15 5.3e-05 0.0033 18.6 3.7 1 23 263 285 263 285 0.97 6 15 0.12 7.6 8.0 0.2 1 23 295 317 295 317 0.98 7 15 5.5 3.4e+02 2.8 8.6 1 23 325 348 325 348 0.96 8 15 0.00025 0.016 16.5 1.0 2 23 364 385 363 385 0.97 9 15 0.0003 0.018 16.3 2.0 1 23 391 414 391 414 0.97 10 15 3.7e-06 0.00023 22.2 1.8 1 23 421 443 421 443 0.94 11 15 0.001 0.062 14.6 0.3 1 23 449 472 449 472 0.95 12 15 0.026 1.6 10.2 3.1 1 23 478 501 478 501 0.96 13 15 8.5e-05 0.0052 18.0 3.9 1 23 508 530 508 530 0.97 14 15 6.9e-05 0.0042 18.3 2.6 1 23 536 558 536 558 0.96 15 15 0.0002 0.013 16.8 0.4 1 23 563 586 563 586 0.94
Sequence Information
- Coding Sequence
- ATGACCATTACAAAGGTAACAAACGATTTGATGCAGTTGATACAATATAATCCAAAAGTTATTACAGAATTTTCAGAACAAATACAAAATACGGAATTTATTGAAGTCGCCTCTGAATCCATGACCGATCTAGTTGAAGTTAAAATGGAATGTAAATCGGAAGATAATGCTCAACCAGAAGATACATTGCAATTAATTAAATGCGAGCCAAACATAGAAACTATTACATTTGTTGAAACAAATCAAAGTTGCAGTAATTCAACAATGATGTCCGACGAAGAGTCCATGGCAGCTGAAACCAGCAATGAGTCCAATTGCAATGATGAGATGGCCTATTCGTGTGACTTTTGTAAACAATCATTTGCTAAAAAGTCACAAGTTTTAACACATTACACTTCAAGTCATCCGAATATGTTAGATGATCTGAAATGCAAACTTTGCTCTTACGTTGCCTACAACAAAAAACGGTATCTAAGAGAACACATTAAGGCGTATCACGAGAAAGGGGATGAGACTAGTGAAGAGGCGGCCGTCATAGATCTTAAGGAAAAATCCTCGGCAAAAACATACTTCTGTGACTTTTGTAAAGAGATTTTTCCTAAAATGTCTTTGGTTTTGGAACATTATAAGCTAAGCCATCCGAATAAGCTGGAAGATCTTAAATGCATATATTGTGACTACGTTGCCTATAATAAACGTCGTTATTTAACAGAACACATTCGACTGGCTCATCCCGCGTATTTAAGAAAAAATAAAGCGGGAAAAAACAAGCGAAAACCACGAAACTTTTTTTGTGCCAAATGTAACAAATGTTATGCTACAAAGTCAACTCTTTTAAAACATATACTAAGCCACCTGCAAGTGCGTCCTGAACATCCAGAATATGTTTGTGTATTTTGTAAACAAGGTTTTGCAGAAATACCACAGCTGTTGGAACATTTTAAGACCCATCCCGACAATCTCTTGGAAGATTATAAATGCAAATTTTGCCCGTTCATTGTTCATATGAAACGTCATATGCGATCGCACGTTCGCACTTGCCATCCAGCAGAATATGTAGCAAGACGAAATTATTTTGATGAACCGAAAACGTGTAACATGTGTGGCAAAATATTTAATCATATTCGGCAATACGAGGAACATATGGCCATACATTTAGATTTGAAATTGCACAAATGTGGTGTATGCGATAAAGGCTTTAATTTAAAACAAGATTTATTTATCCACTATAGAAGTCAGCATACAAATAAGGAAAGTACACATATTTGTCCGATATGCCAGCGTACATTCAAGAACTCCActaatttacgcagacataatattgtccatactggtgagaaaccattcaaatgtgaaatttgtccaaggagatttaCGGTTCAATTGACCGCAATTCGTCACCAAAAAGCGGTTCATAATAATGAGAGAGCTTATCAGTGCTACATTTGTGGATTAAAATTTGTGTGCAATGGTAAGCTTAACACGCACATCAAATTCAAACATAGCAATGTGGAGAAAAATCATCAGTGCAATTTATGCGACAAGAAATTCTTTACTGAATATACTTTGCAAAAGCATCAAATTTTGCATACTGGTCTGCGGCAGTTTCATtgcgatgtttgcggtaaagattttgcaactaaacgttcccttcggaaccacaagtacattcatatggataaaagatttcagtgtagtatttgtggtatgaaatttgtacaTTTGAGTGGACTTCGTGGCCATGAGAAAGGAGTGCATAATATAGTGTAA
- Protein Sequence
- MTITKVTNDLMQLIQYNPKVITEFSEQIQNTEFIEVASESMTDLVEVKMECKSEDNAQPEDTLQLIKCEPNIETITFVETNQSCSNSTMMSDEESMAAETSNESNCNDEMAYSCDFCKQSFAKKSQVLTHYTSSHPNMLDDLKCKLCSYVAYNKKRYLREHIKAYHEKGDETSEEAAVIDLKEKSSAKTYFCDFCKEIFPKMSLVLEHYKLSHPNKLEDLKCIYCDYVAYNKRRYLTEHIRLAHPAYLRKNKAGKNKRKPRNFFCAKCNKCYATKSTLLKHILSHLQVRPEHPEYVCVFCKQGFAEIPQLLEHFKTHPDNLLEDYKCKFCPFIVHMKRHMRSHVRTCHPAEYVARRNYFDEPKTCNMCGKIFNHIRQYEEHMAIHLDLKLHKCGVCDKGFNLKQDLFIHYRSQHTNKESTHICPICQRTFKNSTNLRRHNIVHTGEKPFKCEICPRRFTVQLTAIRHQKAVHNNERAYQCYICGLKFVCNGKLNTHIKFKHSNVEKNHQCNLCDKKFFTEYTLQKHQILHTGLRQFHCDVCGKDFATKRSLRNHKYIHMDKRFQCSICGMKFVHLSGLRGHEKGVHNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -