Basic Information

Insect: Diadocidia ferruginosa
Gene Symbol: -
Assembly: GCA_027564275.1
Location: JANSTW010040061.1:5458-7764[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00058 0.035 15.4 4.3 1 23 208 230 208 230 0.97

2 11 2.3e-05 0.0014 19.7 0.5 1 23 236 258 236 258 0.99

3 11 0.0078 0.48 11.8 3.9 1 23 264 287 264 287 0.95

4 11 0.017 1.1 10.7 3.5 1 21 293 313 293 315 0.95

5 11 0.00028 0.017 16.4 1.9 1 23 321 343 321 343 0.99

6 11 5.6e-05 0.0035 18.5 1.2 1 23 349 371 349 371 0.98

7 11 0.0026 0.16 13.3 1.4 1 23 379 402 379 402 0.96

8 11 0.011 0.65 11.4 1.2 2 23 409 430 408 430 0.97

9 11 0.00027 0.017 16.4 0.3 1 23 436 458 436 458 0.99

10 11 1.8e-05 0.0011 20.1 1.8 1 23 464 487 464 487 0.96

11 11 2.5e-06 0.00015 22.8 3.9 1 23 501 524 501 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00058	0.035	15.4	4.3	1	23	208	230	208	230	0.97
2	11	2.3e-05	0.0014	19.7	0.5	1	23	236	258	236	258	0.99
3	11	0.0078	0.48	11.8	3.9	1	23	264	287	264	287	0.95
4	11	0.017	1.1	10.7	3.5	1	21	293	313	293	315	0.95
5	11	0.00028	0.017	16.4	1.9	1	23	321	343	321	343	0.99
6	11	5.6e-05	0.0035	18.5	1.2	1	23	349	371	349	371	0.98
7	11	0.0026	0.16	13.3	1.4	1	23	379	402	379	402	0.96
8	11	0.011	0.65	11.4	1.2	2	23	409	430	408	430	0.97
9	11	0.00027	0.017	16.4	0.3	1	23	436	458	436	458	0.99
10	11	1.8e-05	0.0011	20.1	1.8	1	23	464	487	464	487	0.96
11	11	2.5e-06	0.00015	22.8	3.9	1	23	501	524	501	524	0.98

Sequence Information

Coding Sequence: ATGGCATCTCGATTGGACGAAAATGTAGAAATAAAACTGGAAGGAAACACCGGGTTACAGACATATTTGGAAACGTTTAACAATGAAATTGAGAGCAATGATCGGCAGACAATTGCAGTGATACAAGAAGAATCTGACGACGATGACGAAGATGTGGGAACGTATTTTGTTGATAACAGCGGAAATTACTATTATAAAGCGAACAAAGACTCTGAACCGGTTCTAACAGAACCGCCACCACAAAGTATGATTGCAGAATATGTGGACGATGAGGACGAGGATGAGGCCGACCATGCTATGAGTGCCGAGCCAACCCCATCGACAACAGATGAATCGGACAAGAAACGCAGTGCCACTGACAAAATTCGTGTAATTCAATCGGAGGACAATGAAGGTGAAGTCAGTTACGTATTTATAATGGACGAAGATGAGAATAACACGAAAGCAGATGGTGAAGAGGGTGATGAGAATAATTCTGAAGAAAAGGTATATGAGTTTGAAGATGGCGAAGAGCCTGAAGTAGATGCTCTTATGGACGAAGAAGAAAATGTGTTGGAAGATGATAAATCGCAAATTCGTAAAGTTGCAACCAAACGGCAAAGTTCAAATTCATCGCAGGTACACATGTGTAATTATTGTAATTACACAACTCCGAAGCGTTATCTGTTGTCGCGTCACATGAAATCACATTCCGAAGAGCGTCCATTTAAATGTTCGGTTTGTGAGCGCGGCTTTAAGACCGTAGCGTCGTTGCAAAATCATGTGAACACACACACCGGCACCAAACCGCACCATTGTAAATTTTGTGAAAGCGCATTTACAACGTCCGGTGAATTGGTGCGGCATGTTCGTTACAAACATACGCATGAGAAACCACACAAATGTACAGAATGTGATTATGCGAGTGTCGAGTTGAGCAAACTTAAGCGACACATTCGTTGtcacactggcgagcgtccttatcaatgtccccattgtacttacgcatctcctgacacatttaagctaaaacgtcacttgcgtattcacactggcgaaaaaccatatgaatgtgatgtttgccatgcccgatttacccaatccaattcgctgaaagcacataaactaatccacagcgTTGGAGATAAACCCGTGTTTAATTGTGAACTATGCCCAACGACATGTGGACGAAAAACCGATCTACGCATACATGTTCAAAAATTGCATACTTCTGAGACGCCACTGAAGTGTAAACGTTGCGGTAACTTGTTTCCGGATCGTTATAGTTATAAGCTTCATGCGAAAACCCACGAAggcgagaaatgctacaagtgtgaattgtgtccgtatgcatcgatatcggctcgtcatttggaatctcatatgttgatccataccgatcagaaaccttatcagtgtgaaagttgtgatcaatcatttaGGCAAAAACAATTACTTAAGCGTCACGTTAATCTGTATCATAATCCCCATTATGTGGCACCAACTCCAAAGGAGAAAATCCACAAATGTCCAAACAATTGCAATCGTTCGTTCCGACATAAGGGCAATCTAATCCGGCATATGGCCATGCATGACCCTGAGTCAAGTGCACGAGAACAATCGATAGCATTGAAATTGGGTCGCCAAAAACGTATACAAATtatcgatggtcaaccggttgaaatttattcgggcggtgaagatgatgacgaaggagaagaagaggaggaagaagaggaagacgaagaagaagaggaggaagacgaagacggcgaagaaattactagcgattacaaaacaaccggtaaaaataagaatatgcttgttaacgtggaaggagacgatggccaaCAGTATGTGGTGGTAGAAGTAATTCATCAATTACAAGAAGAGGACAATCGAAATAATTTGGATGCTAAGGATATTGATCTATTGGAGAGAGATCCAATGGCTGTTGGCGATGATTTCATAATGTCCGAATTTGACGATGATGTCCTCCAAACACTTAGGACTAGCAAAAAATTACGAGAAGAACCGAATAAAATGCTCGCCGATGACAATAATATGGCAAACTGTTTCGGTTTTGATGTAAGTAAAACCATTGACATTTCATATAGTAGTCTATTACTGTAA
Protein Sequence: MASRLDENVEIKLEGNTGLQTYLETFNNEIESNDRQTIAVIQEESDDDDEDVGTYFVDNSGNYYYKANKDSEPVLTEPPPQSMIAEYVDDEDEDEADHAMSAEPTPSTTDESDKKRSATDKIRVIQSEDNEGEVSYVFIMDEDENNTKADGEEGDENNSEEKVYEFEDGEEPEVDALMDEEENVLEDDKSQIRKVATKRQSSNSSQVHMCNYCNYTTPKRYLLSRHMKSHSEERPFKCSVCERGFKTVASLQNHVNTHTGTKPHHCKFCESAFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCHARFTQSNSLKAHKLIHSVGDKPVFNCELCPTTCGRKTDLRIHVQKLHTSETPLKCKRCGNLFPDRYSYKLHAKTHEGEKCYKCELCPYASISARHLESHMLIHTDQKPYQCESCDQSFRQKQLLKRHVNLYHNPHYVAPTPKEKIHKCPNNCNRSFRHKGNLIRHMAMHDPESSAREQSIALKLGRQKRIQIIDGQPVEIYSGGEDDDEGEEEEEEEEDEEEEEEDEDGEEITSDYKTTGKNKNMLVNVEGDDGQQYVVVEVIHQLQEEDNRNNLDAKDIDLLERDPMAVGDDFIMSEFDDDVLQTLRTSKKLREEPNKMLADDNNMANCFGFDVSKTIDISYSSLLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -