Dfer034604.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010069575.1:2900-4729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.091 5.6 8.4 0.7 1 14 29 42 29 49 0.81 2 14 0.00011 0.007 17.6 1.0 1 23 122 145 122 145 0.97 3 14 0.0032 0.19 13.0 0.7 1 23 152 179 152 179 0.96 4 14 0.00025 0.015 16.5 1.6 1 23 226 249 226 249 0.98 5 14 5.4 3.3e+02 2.9 0.2 2 9 260 267 259 269 0.89 6 14 1.2e-06 7.3e-05 23.8 9.0 1 23 288 310 288 310 0.99 7 14 3.8e-06 0.00023 22.2 0.8 1 23 348 371 348 371 0.98 8 14 5e-05 0.0031 18.7 7.6 1 23 409 432 409 432 0.97 9 14 2.6e-05 0.0016 19.6 0.3 1 23 439 461 439 461 0.98 10 14 3.3e-07 2e-05 25.6 0.7 1 23 467 489 467 489 0.98 11 14 0.0012 0.071 14.4 2.8 1 23 495 518 495 518 0.95 12 14 0.036 2.2 9.7 1.3 1 23 525 547 525 547 0.94 13 14 0.00036 0.022 16.0 1.2 1 23 555 577 555 577 0.96 14 14 0.025 1.5 10.2 1.3 1 23 583 606 583 606 0.91
Sequence Information
- Coding Sequence
- ATGGATAAGAACGATTCGGAATTATTTGTGGATCTACGGAAATTGGGCGAATTTTATGGCAACCGAAAAACGGGTCAATATGTTTTCGTTTGTTATCATTGTGGCAAACACTTTGATAGTTTCACCGAAATAGATGGTCACATTGCGGAAGAGAATCAAGAAATTGCTGAAATAACTGATCTAAAGATTGATGACGAAGTCAGATGTATTAAATTGGAACCACATCCACAAGTAGAGGAAATATTATTTGATTTAAGTAGCTGTGAAGTTAAAGAAGAGAATGATGTGGACATTAAAGATGACTGCTTAATTTCAGCTGCTGTAGTGGAATCGATGGAGGATATTGTGTCAGAAAATATAACGTTTACATGTGATATTTGTAATAAGACGTTTAAAACTAAATTAAAGATTGCCGAACATATGATTAGGTCACACAACCGCCCTGATAAAGAATATCGATGTAACATTTGTCCTATGGATGCCAGCAAGGTCTACTCTAAGAGAGGATCGTTTCGAAAGCACATGAGTTTGTATCACAGAAATGAATTTAAGAAAATGATTCTTCAGAAATGTAATAATAATGCGACCGTCAATTGTGAGATTTGTAATAAAATTCTAATCGTAGGATCGATTTCAGCCAGAGAACATATGGAAACGCATCAAAATTTACACACTTATAAGTGCACAGAATGTGATGGGGGATATAATACACACACTCAATTACGAATACACTTGAGGAGAATACACAAAATACGGGAAAATCTAGAGGAAATGTCCAAATGTGAAATCTGTGACAAAGTTCTGGACGCCGGACTGAATGCAACCAAAGAACATATGGAAATACATGAAAATTTAAAAGCCTATAAATGCGACAAGTGTGACAAATGCTTCAACACTCAAACTCATTTACGAAAACATTTAAGACGACACAGAGCACGCGAGAAACGGGATTCAGTTAAATGTGAGATATGTAAGAAGACGCTTAGTGCCGGGCATAATGCGGCCAAAGAACACATGGAAATGCATGCCAATTTACAATTGTATAAATGTCCGATTTGTGCTAAGGGATACAATACACAAACCTACTTACGCAAACACATAAAACGCGGTCATGACGACGAAGTCGCGGGAGCCTCTGTCAAATGTGAAATGTGTGATAAATATCTCATGGCTGGATCGCAGGTGGCTAAAGAACACATGGAAACGCATTATAATTTACAATCGCACAAATGTACGCAAtgcgagaaaacgttcaatacaaacacccatctgcgaaggcacgtaaaacgatcacacaccgaatgtgcacggaaatacgtttgcgaagtctgttcgaaatcatttcgtgaggatcgtcttttaaagattcacatacgaattcatacgggcgagaaaaattacaaatgtgagatctgcaataaggcgtttagtcagtccggttatttgaaaatacacagacgaggtcatacgggcgagaagccctatcaatgttacatttgtggcgtgagtttcgattcaactgccaaattaaaccatcacacaaaattcaAACATACAAAATTAGAAAAGACCTTCGCCTGTACGATTTGCGATCGAAAATTTATGACCGAATATTTGCGCGATAAACACGAAAAAAATCATTCGCTAGCCGGTCTGCGaccattccagtgtgaagtgtgtaagaaatttttcgcatcaaagaAAGTGTTGCGAAATCATGAGCTCTTGCACGGCAGCGATAAGCGGTTCAAATGTAAATTTTGTGATATGACGTTTGCGCAATCGGCCGGACGTCGAGGACATGAAAAGAATAAACATCTTAATGTATGA
- Protein Sequence
- MDKNDSELFVDLRKLGEFYGNRKTGQYVFVCYHCGKHFDSFTEIDGHIAEENQEIAEITDLKIDDEVRCIKLEPHPQVEEILFDLSSCEVKEENDVDIKDDCLISAAVVESMEDIVSENITFTCDICNKTFKTKLKIAEHMIRSHNRPDKEYRCNICPMDASKVYSKRGSFRKHMSLYHRNEFKKMILQKCNNNATVNCEICNKILIVGSISAREHMETHQNLHTYKCTECDGGYNTHTQLRIHLRRIHKIRENLEEMSKCEICDKVLDAGLNATKEHMEIHENLKAYKCDKCDKCFNTQTHLRKHLRRHRAREKRDSVKCEICKKTLSAGHNAAKEHMEMHANLQLYKCPICAKGYNTQTYLRKHIKRGHDDEVAGASVKCEMCDKYLMAGSQVAKEHMETHYNLQSHKCTQCEKTFNTNTHLRRHVKRSHTECARKYVCEVCSKSFREDRLLKIHIRIHTGEKNYKCEICNKAFSQSGYLKIHRRGHTGEKPYQCYICGVSFDSTAKLNHHTKFKHTKLEKTFACTICDRKFMTEYLRDKHEKNHSLAGLRPFQCEVCKKFFASKKVLRNHELLHGSDKRFKCKFCDMTFAQSAGRRGHEKNKHLNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -