Dfer021301.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010051678.1:10296-16600[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 5.6e-06 0.00034 21.7 1.8 2 23 98 119 98 119 0.97
2 10 3.5e-06 0.00021 22.4 0.6 1 23 125 147 125 147 0.95
3 10 4.1e-07 2.5e-05 25.3 0.3 1 23 153 175 153 175 0.98
4 10 4e-05 0.0024 19.0 0.6 5 23 187 205 181 206 0.90
5 10 3.5e-05 0.0022 19.2 0.6 1 23 211 233 211 233 0.97
6 10 1.4e-05 0.00089 20.4 3.6 1 23 239 262 239 262 0.98
7 10 0.0069 0.42 12.0 3.8 1 23 268 290 268 290 0.99
8 10 0.00031 0.019 16.2 1.1 1 23 295 317 295 317 0.99
9 10 0.00017 0.01 17.0 0.5 2 23 324 348 323 348 0.95
10 10 0.39 24 6.5 4.1 1 20 504 523 504 527 0.90

Sequence Information

Coding Sequence
ATGGTGGTCACTTTTTCCAATGGCAGCGATATTAGCTTTAAACGTGGACAAGCAAAAATAGCATCGAAGCGACTCCAAATGGGATTGATACAAACATTTAGATGGCTTAAAACATGGAGAATTAAGGCAAACGTGGAAATGTTAAATTTATCTCACTCTACAGCTGCCATGATGCATGCCGTTGAACAAACAATCAGTCGACGTGCAGAAGCGAATATATTTCAGCTTGTCTACGAACTGGAGCGTTCCTTGCAAAATGTTGAAAACGAACTACTTTATGGTGAAGAAGGAACTTGCAGTCTCTGTTCGAAAACATTTGCACGTAAATCTTCACTATTAACGCACATTCGGAACCACACGGCCGAACGGAAATTTCTCTGTTCTTATTGTCAAAAAGGTTTCACCCAGGCTGCAAATTTACGCAATCACGAACGAATTCACACGAATGTCAGGCCGTACGTTTGCGGCGATTGTGGTAAAGCGTTTACCCAGATTACAAATTTAAACAATCATCGAAGATTACATACGGGCGAACGTCCGTTCGTTTGCATTGAAGCCGATTGTGGACGATCATTTGCGCAGGTCACAAATTTAAACAATCACATGAAATCACATCATAAAATTCAACAATACGTGTGTAATCAATGTCCGCGACGTTTTACGCAGGTCACATCGCTGAATCAACACTTACTACTTCACACCGGCTTCAGTGGATTCTATTGTCCCCAATGTCCGGATAAAACGTTCAAGCAACAAAGTCAATTGCATCAGCACATGAAAACGCACGGTCTAAATTTTCCATACGAATGCAATCAATGCGAGGAGAAATTCTTGCAAATGGCCCACTTAAGTCATCACATGAAAATGCACGAGGAATACAAATATCGGTGTACGATGTGTGTGAGTTCGTTTAATCAGGAGGTTTTGCTGAAGAAACACATTCAACGACATATCGACGGGAGATACATAACATGTCCAATTCAAAATTGCAACAAAGGTTTTACATTGAAAACTCAATTAACCAAACACTTGCAATCGGTCCACGTTCATCAGACGGCACAGCTTCAACAACTCGGTATTGTGATTAACAATGGTGAAGCACCCGCAATATCCAGTAGTATTCCTAGACGAGCTGCTGTTAAACGATTAGATGCAGGTAaaaaacgtaacaaaatggaccacctaatgtttgccgaacaaatcaagaatcaaaagaacgaacatcaacagcagcagcaacaacaccaacatcagcaacaacagcagcagcagcatcagcaacaagtgcagaatcaacatatgcaacaattgcaacaacatcaacagcaacaacaacatcatcacaatcatatggtggctgccataatgagtagtcacacAAATGAACAAATGCTAAAGGCAGCTGCCATCACAAGTGGGCTCGGTGTAATTGGAAATTTAACCGAAAAACTAAGCAATGGCATTGTGGGCAGCGGCAATGCCGGCACTGTTGTTGCTGACGTACGGAATTACAAGTGCCATGAATGTAATGTCTACTATGACAATGaacgtgactttaaagtacataacttttacaaacatcctgatctgcaacaacagcagcagcagcaacaacaacagcagcagcaacagcaaaaaatgcaaacaatgcattaa
Protein Sequence
MVVTFSNGSDISFKRGQAKIASKRLQMGLIQTFRWLKTWRIKANVEMLNLSHSTAAMMHAVEQTISRRAEANIFQLVYELERSLQNVENELLYGEEGTCSLCSKTFARKSSLLTHIRNHTAERKFLCSYCQKGFTQAANLRNHERIHTNVRPYVCGDCGKAFTQITNLNNHRRLHTGERPFVCIEADCGRSFAQVTNLNNHMKSHHKIQQYVCNQCPRRFTQVTSLNQHLLLHTGFSGFYCPQCPDKTFKQQSQLHQHMKTHGLNFPYECNQCEEKFLQMAHLSHHMKMHEEYKYRCTMCVSSFNQEVLLKKHIQRHIDGRYITCPIQNCNKGFTLKTQLTKHLQSVHVHQTAQLQQLGIVINNGEAPAISSSIPRRAAVKRLDAGKKRNKMDHLMFAEQIKNQKNEHQQQQQQHQHQQQQQQQHQQQVQNQHMQQLQQHQQQQQHHHNHMVAAIMSSHTNEQMLKAAAITSGLGVIGNLTEKLSNGIVGSGNAGTVVADVRNYKCHECNVYYDNERDFKVHNFYKHPDLQQQQQQQQQQQQQQQKMQTMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-