Dfer014109.2
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010028894.1:11790-13727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.094 14.0 1.2 2 23 183 204 182 204 0.96 2 12 0.0017 0.11 13.9 1.4 1 23 210 233 210 233 0.97 3 12 0.016 0.96 10.9 0.3 1 23 243 268 243 268 0.93 4 12 0.00043 0.027 15.7 1.1 2 23 279 300 278 300 0.97 5 12 2.5e-07 1.5e-05 25.9 1.2 1 23 306 329 306 329 0.96 6 12 0.0014 0.085 14.2 1.4 1 23 348 373 348 373 0.93 7 12 0.00079 0.049 14.9 0.6 2 23 381 402 380 402 0.93 8 12 0.00011 0.0069 17.6 2.8 1 23 408 430 408 430 0.96 9 12 0.044 2.7 9.4 0.2 2 23 437 458 436 458 0.95 10 12 0.023 1.4 10.3 0.9 1 23 464 487 464 487 0.90 11 12 2.3e-05 0.0014 19.8 1.5 1 23 493 515 493 515 0.98 12 12 2.3e-06 0.00014 22.9 1.6 1 23 521 543 521 543 0.96
Sequence Information
- Coding Sequence
- ATGCAAGTAACGTCTGTTGGTCCGTCGTTTTCTTTTTTACAACCAAAACGAAATGAAAGTGATTGCGGTACGTCGCAGGACGATACCACCGCACCTTGTCGGGCTTGTATGAAAGAAAATAGTCCAAGCGAAATGATTTCCTTGTTTGTAAATATAACAACCGTAGAAATTTATAAAAAATGTACATCAATAGAGGTTAATGACACCGATCAACTTCCGTCACACATTTGTACACTGTGCCACAATCAATTAATAAATTTTAATCAATTTCGGATGACATGCATGGACTCCGATAACGCCTTTAGGCAACATATAGCAATAAAATTAGAAAATGAAGAAGATCAAAAGTCGGTTTTATTTATTCTGGAGCAGAATGGTTCCGATAGACTTCAAAAAGATTTGGAAGAATATACAGTCAAAGATGAAGAAAACATATCCTATAACAATGATTATGAGGCGTCCACGGCAGGCAGTGATATCGAAATCAATAATCTAGAAATCAATGATAGCAAAGAAGAGGGCCAGTTGAAATATTCAACAAAATTATATTGCGATATTTGTAATGGTTCGTTTGTGAAGAAACGTTGTTTAGCAGCTCATTTGAGGCAACATGTCGGACTCATGCCATATCCGTGCAAGAAATGTAAATCTGAATTTGTTAAATGGAACAATTTAAGCATGCACTATAAAGTAAAACATAACGGACGTGGTAAAAAAATGGACACATATATTTGCTCCACAGAATCGTGTTCAGAGTCATTTGATGATAAGACCGCATTGACATTACATCGAAAAGAAATGCACACagaacattcattggaaccgaaaaaacttacatgtgataaatgcgacaaaaagtttttgaaacaatatgtacttgaagctcaccaaagaacacatcaaggattaaaaccatttaaatgtaatgattgcgataaagcatttAAACGAAGCTCTGCTCTTAAGGAACATGTTAAACTGAAACATTGTCCTCTTGTGGAAAAAGATCCATCCAAACAATACGAAGACTCACCAAAGGAATTTATCTGCGAATATTTGGATTGCAATAAAATATTTAAATACAGTAAATCATTGTTAACTCACACGAAATTCGTGCATACTGGCGAACTAGATCGTTTAGTTTGCGAATTGTGCGGAAAGAAATTTTTCAGTAAATTTGCTTTAAAGGAACATTCTTATATTCACACTGGAGAACTGCCCCATGCATGTAAAATTTGCCCGAAAAAATTTCGCTTTAAAAACGGCCTCCGGTCACATGTTATGCGTCACGAAGGGATCAAAAAATGTGTTTGTAGCGTATGTGGGGCAGAGAAAGCCACTAGAACTGAACTAAATATTCACATGAATATTCATACAAAGGAGAAAACCTTTCCCTGTACAATCTGTTCAACGATATACAGCAGTTACAATTCATTGTTTCAACATAATTCATATGTAcataaaggtaaaaagccatacgtttgtaaatattgtaatcaagcattcaataagacgtcttcgctcaaggaccatgttatgcgacacacgggagaaaaaccacacgcttgcaaattatgtgaccaacgatttattcaatcgtctgcattgaagaaacacatgaatgttcatatgaaaaaaaaTGTTGCATAA
- Protein Sequence
- MQVTSVGPSFSFLQPKRNESDCGTSQDDTTAPCRACMKENSPSEMISLFVNITTVEIYKKCTSIEVNDTDQLPSHICTLCHNQLINFNQFRMTCMDSDNAFRQHIAIKLENEEDQKSVLFILEQNGSDRLQKDLEEYTVKDEENISYNNDYEASTAGSDIEINNLEINDSKEEGQLKYSTKLYCDICNGSFVKKRCLAAHLRQHVGLMPYPCKKCKSEFVKWNNLSMHYKVKHNGRGKKMDTYICSTESCSESFDDKTALTLHRKEMHTEHSLEPKKLTCDKCDKKFLKQYVLEAHQRTHQGLKPFKCNDCDKAFKRSSALKEHVKLKHCPLVEKDPSKQYEDSPKEFICEYLDCNKIFKYSKSLLTHTKFVHTGELDRLVCELCGKKFFSKFALKEHSYIHTGELPHACKICPKKFRFKNGLRSHVMRHEGIKKCVCSVCGAEKATRTELNIHMNIHTKEKTFPCTICSTIYSSYNSLFQHNSYVHKGKKPYVCKYCNQAFNKTSSLKDHVMRHTGEKPHACKLCDQRFIQSSALKKHMNVHMKKNVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -