Dfer029490.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- Znf574
- Assembly
- GCA_027564275.1
- Location
- JANSTW010017562.1:5158-7593[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.9 4.8e+02 2.3 0.1 1 8 55 62 55 71 0.87 2 12 0.17 11 7.6 4.0 1 23 171 195 171 195 0.97 3 12 0.0003 0.019 16.2 2.9 1 23 201 224 201 224 0.93 4 12 0.0015 0.092 14.1 1.1 1 23 237 259 237 259 0.96 5 12 5.6e-06 0.00035 21.7 0.6 1 23 265 288 265 288 0.97 6 12 6.7e-05 0.0041 18.3 0.2 3 23 299 322 297 322 0.93 7 12 0.00029 0.018 16.3 0.6 1 23 332 354 332 354 0.97 8 12 2.2e-05 0.0014 19.8 3.6 1 23 360 382 360 382 0.98 9 12 0.0099 0.61 11.5 1.4 1 23 388 410 388 410 0.97 10 12 9.9e-05 0.0061 17.8 1.5 1 23 416 439 416 439 0.97 11 12 7.8e-06 0.00048 21.2 6.2 1 23 445 467 445 467 0.99 12 12 4.5e-05 0.0028 18.8 0.1 3 23 475 495 473 495 0.96
Sequence Information
- Coding Sequence
- ATGGAATTTGTTGATATAAAATCTGATATAATTCAGTGCAGAGCCTGTACAATTGAAATGAACAAATGCGAAATGATCCATTTGTATAAGGAGCCCAATTTATCACAAATATTTCTGCAATGCACCGCAATAAAGATAAGTGAATCGGATTCGTTTCCAGAATTTATGTGTCCGGATTGTAATTATCTGCTGATTAAACTAAATGATTTTCGTCAAATATGCCACACATCCGATAAATTTTTTCGAGAACAGGCTTTGGAGAATTTAATTAAAATTGAAAATGAAATTAAAATTGAACCATTATTTGATGACACAATACCGCAGCTTATTGATGTTATGGATAAAAAAAAAGAATCAAAACGAAAATCTGAAGCTGTAGCAAATCTGAAAAATGGCCATGCCCAATCCTCATCAGACGAGCAATTTCCAAATGACATAGATGATAAGGATTATTTTAATAATGCAGCAATCATAGTACAGGATAAACCAATCGATCTGTTTGGTGAAGGATTTTATTGTGACCTTTGCGATTGCAAAAAAAAATTTTTGCAAAAAAATCGCATTGAAGCACATATGCGAAAACATTTTGGGCTAAAACCATTCCAATGCAACTTATGTGACAAAAGTTATGCGAAATGCTCAAGTTTATCCAAACATAAGGGAAGCATCCATTGCCAGATTGACGGTACAAATAGAGTGAATAAAAAACACATATGTAATATATGTGGCAAAATGTACTATAATAAATTGCGTTTGGATGGACACATGCGGGAACATCAAGGACTGAAACAATTTGTGTGTAATATATGCAATAAAGAATATACCAGATTAACATACTTAAATAGTCACATTAAAGTTGAACATAACAAAGACGGAACATTTGAAAAAATTGATTGTACCTATGCAGGCTGTGACAAGACGTTTAACTATCGTGCAACTCTCCGGGTTCACATCAGAAACGTTCATCAGGCCGATATATTTCCAAAACGAACATATGTTTGCGATGTTTGTGGAAGATCTTTTGGAAATAGTTTTCGATTAAATGAACATTCGTACACACATACGGGCGAGAAACCATTTAGTTGTGAACGTTGTCCAAAGAAATTCACGACTAAAAAATCTTTAAAATCCCATACATTGCGGCATGATAATATACGAAATCACGTTTGCACAATATGTGGACAGAGAAAAGTGACGAGCAAAGAGTTGAAAATTCATCTTAATTATCACACAAAAGAGAGAACATACCCTTGCACCAAATGTCCAAAGATATTCAATGGCCATAATAATTTACGATCtcattttcgcattgtacacatggactataaaccgtacaaatgtgaacactgtaaccgaacttttagtaaatcgggtacattgaaacatcacgttatgacacacaccggagaaaaaccacttgcatgcacaatatgtgacaagagatttattcagcttgccgccattcgagctcacatgaaagtccataATAAATAA
- Protein Sequence
- MEFVDIKSDIIQCRACTIEMNKCEMIHLYKEPNLSQIFLQCTAIKISESDSFPEFMCPDCNYLLIKLNDFRQICHTSDKFFREQALENLIKIENEIKIEPLFDDTIPQLIDVMDKKKESKRKSEAVANLKNGHAQSSSDEQFPNDIDDKDYFNNAAIIVQDKPIDLFGEGFYCDLCDCKKKFLQKNRIEAHMRKHFGLKPFQCNLCDKSYAKCSSLSKHKGSIHCQIDGTNRVNKKHICNICGKMYYNKLRLDGHMREHQGLKQFVCNICNKEYTRLTYLNSHIKVEHNKDGTFEKIDCTYAGCDKTFNYRATLRVHIRNVHQADIFPKRTYVCDVCGRSFGNSFRLNEHSYTHTGEKPFSCERCPKKFTTKKSLKSHTLRHDNIRNHVCTICGQRKVTSKELKIHLNYHTKERTYPCTKCPKIFNGHNNLRSHFRIVHMDYKPYKCEHCNRTFSKSGTLKHHVMTHTGEKPLACTICDKRFIQLAAIRAHMKVHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -