Dfer018124.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010058775.1:1454-3370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.51 32 6.1 0.1 1 23 37 60 37 60 0.92 2 14 0.015 0.93 10.9 0.4 1 23 163 186 163 186 0.97 3 14 0.03 1.8 10.0 0.3 2 23 200 222 199 222 0.94 4 14 0.0001 0.0062 17.7 0.4 3 23 231 252 230 252 0.94 5 14 3.4e-05 0.0021 19.2 0.7 1 23 321 343 321 343 0.98 6 14 0.0018 0.11 13.8 0.4 1 23 351 374 351 374 0.95 7 14 3.3e-05 0.002 19.3 0.3 3 23 383 404 382 404 0.96 8 14 8.5e-05 0.0052 18.0 0.8 1 23 442 464 442 464 0.98 9 14 1.1e-05 0.00066 20.8 2.3 1 23 470 492 470 492 0.98 10 14 6.8e-05 0.0042 18.3 1.2 1 23 498 520 498 520 0.98 11 14 0.00054 0.033 15.5 5.2 1 23 526 549 526 549 0.97 12 14 0.6 37 5.9 6.5 1 23 554 576 554 576 0.94 13 14 0.0001 0.0063 17.7 1.4 1 23 582 604 582 604 0.97 14 14 0.0026 0.16 13.3 3.1 1 23 610 633 610 637 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAAATCTATTTTGAAAATATCAAAATTGAGCCTCCGCCGGCGGAGCCACATTTTATTAAATGCAGTGAAGTTTTTCGCAACAATTTATCCGGAAAATATTGCTATTTTTGTTATCATTGTGGCAATGAGTACGATTCGGACGAACAAGTAATTGCTCATATTGAAGCTGAACATGTTCTAAAGACCGACGAGGATGTTAATCTCGATGTTAATTGTAAATTTGAAGAAATAAATCTCGAAGAAGGCGTAAATACTGATCTGAAATTGGAAATAAGCCAGGAGAATTCATTTCAAAATAATGAAAGTTCAATAAACTTTTATGAAGAGTTGAGTATCAACAGAGACAAGAATTCATCTAGATCCAACATATTCTCAAATGATGATCAATGTATCGAAGACGGTGTGCCTATTGAATCCATACCAAACAAAACAATTACTAAATCAAATCATATGATTGTTAACCAGGATAATTCGACAGTATTCCCTTGTAATTGGTGTGCTAAAATTTTCCTTAAGAAAGGAAACTTACGGGATCACAATAGGAAGATACATAATATGGAATGGAGAAAAGAAAACAAGTATGATTCTATTTATTGTGATATTTGTCCCAGTAGTTTTACAAACCAACTTAGACTAGAGGATCACAAGATAAGAAAGCATTCAGCAGAACCGCAGTCAAAAAATTGCCAATACTGTGGTAAATATTTTCCATTACGCAGCTCACTTACCAGACATGTAAAAGCAGTTCATATTGCCAAAGGTGATCAAAAAATACAGACAATCCAGGAGACATCATTTAAATGTAATGAAAGTTCAAATACATTTTATGAAGATTTGAGTAGCAACAGTGGCAAGAATTCTTCCAACTTATTCTCAAATGATAATCCGTTTATCGTAGAAGGTCTGCCCGACAAAGACACATTGATCGAAACAGAACAGACCGTTACTGAGAAATATTACTGTGATTATTGTCAGCAAGTATTTACGACCAAAAATTTGATTGCAAATCATATGAATATTCACCGCGATAATAATTATGCTTCTTTTGTGTGTGATATTTGTCCCAGTAGTTTTACAAACCAACTTAAATTAGAAGATCACAAGATAAGAAAGCATTCAACAGAATCGAAGTCTAAAAATTGCCAATACTGTGGCAAATATTTTTCATTACGTGGTTCACTTGCCAGACATATAAGAGAAGTTCATAAGATTGTCGACCAAAATTGGAATATAAAATGTCGCAAAtgcaataaatcgtttcatgagattcaaaaatataaggaacactgcaaactgttacacaataacaaaaagtatttcaaatgtgatatatgtgataaggtcgtcaatagtaatagatatttagttgttcataagaaacgacacactgccgatcgagtgcacaagtgcacattttgtccaagggcctttgttgacaagtcgtatttagtgagtcacttgaaaacacacactaaaaataaaacttatgattgcgatttatgcgataaaagttacactgtagcatttacactgaaaatgcacaaaagaactcataccggagaaaaaccatatcaatgtccattttgcggaattaaatttcaccgaactagtcatatgaccaatcacataaactatagacacagtggtcggacacatcaatgtggaaaatgtgagaagaaattttccaccacctacaggttaaaatgtcacgaacaaatacatactgacttaagaccattcaagtgtgaaatatgtgatcggacatttgcacaaaaaagagtattaagatatcataaaatgctgcatggggatgagaaacgctttaaatgtaaatattgtgatatggtatttgcccagccatctgGACGCTGTACTCATGAAAAGAATAAACATATAAACATACATACATAA
- Protein Sequence
- MEQIYFENIKIEPPPAEPHFIKCSEVFRNNLSGKYCYFCYHCGNEYDSDEQVIAHIEAEHVLKTDEDVNLDVNCKFEEINLEEGVNTDLKLEISQENSFQNNESSINFYEELSINRDKNSSRSNIFSNDDQCIEDGVPIESIPNKTITKSNHMIVNQDNSTVFPCNWCAKIFLKKGNLRDHNRKIHNMEWRKENKYDSIYCDICPSSFTNQLRLEDHKIRKHSAEPQSKNCQYCGKYFPLRSSLTRHVKAVHIAKGDQKIQTIQETSFKCNESSNTFYEDLSSNSGKNSSNLFSNDNPFIVEGLPDKDTLIETEQTVTEKYYCDYCQQVFTTKNLIANHMNIHRDNNYASFVCDICPSSFTNQLKLEDHKIRKHSTESKSKNCQYCGKYFSLRGSLARHIREVHKIVDQNWNIKCRKCNKSFHEIQKYKEHCKLLHNNKKYFKCDICDKVVNSNRYLVVHKKRHTADRVHKCTFCPRAFVDKSYLVSHLKTHTKNKTYDCDLCDKSYTVAFTLKMHKRTHTGEKPYQCPFCGIKFHRTSHMTNHINYRHSGRTHQCGKCEKKFSTTYRLKCHEQIHTDLRPFKCEICDRTFAQKRVLRYHKMLHGDEKRFKCKYCDMVFAQPSGRCTHEKNKHINIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -