Dfer013680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010046257.1:6299-8428[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.83 51 5.4 4.8 1 23 28 51 28 51 0.95
2 16 0.00018 0.011 16.9 2.2 2 23 141 163 140 163 0.97
3 16 0.0047 0.29 12.5 4.5 1 23 187 210 187 210 0.98
4 16 9.4e-06 0.00058 21.0 1.9 1 23 230 252 230 252 0.98
5 16 2.1 1.3e+02 4.2 2.7 1 23 265 288 265 288 0.95
6 16 0.0024 0.15 13.4 0.4 1 23 299 322 299 322 0.98
7 16 0.0014 0.084 14.2 0.9 2 23 344 365 343 365 0.96
8 16 0.2 12 7.4 2.8 1 23 384 407 384 407 0.97
9 16 1.6e-05 0.001 20.2 3.5 1 23 418 441 418 441 0.98
10 16 8e-05 0.0049 18.1 3.1 1 23 478 501 478 502 0.97
11 16 0.00011 0.0066 17.7 0.4 1 21 521 541 521 542 0.97
12 16 3e-05 0.0018 19.4 1.7 1 23 552 574 552 574 0.98
13 16 3.5e-05 0.0021 19.2 0.5 3 23 582 602 580 602 0.97
14 16 0.093 5.7 8.4 2.4 1 23 608 631 608 632 0.95
15 16 0.84 52 5.4 6.6 1 23 638 660 638 660 0.95
16 16 8.8e-05 0.0054 17.9 2.5 1 23 666 688 666 688 0.97

Sequence Information

Coding Sequence
ATGCTGATTCAATCGGAACAACGGGCCCTCCAATCAAAATGCGCCGAAATGTTTCGCAACATCGACACAGGCCAGTATGCATTTATTTGTTTTCATTGCGGCTCCTGCTTTGAACAATTTAACCAGATTCACGATCACATTGAGATGGAACATAATTCTACATCCAAAGATATATTTGCAGAAACAGAATTTATTGAAATGGCTGATGAATCTGCGCTAATTGTTAAAACTGAATTGGCGAGTAACTTTGGAAGTGAATACAATTTGAGTGTCGAAGAGGAAAAAAACCATACAAATGTTCATCTTGAAGAATTGCATGACTTCGTCGAAGAGATGACAATTAAAGATGAGCTATTACATGATAGTCACGTGGACGATTTTGGTAACAACAGTAGCGACTCTGACGTAACGGAAGAACTTAAATGTAAAATTTGTCAAAATTCGTATAAAACGAAAAAATTACTGAATGAACATCTTCGAAAACTACATTCCATCTTTAAGCCCACAAAGTCAATAAACAGAAAAGAATCCGTAAATCCATCGGCGCATAATGAACCCTACAAGTGTAACATTTGCGGTAATCAATACTACATTAAACACTCCTTCACCGACCACATGCGGAAGAAACATTCAATTTTTAAGTATAGCAGACAGAATGCAGCTGCTGCTACTGCAGTTGTTGCAGAGTACACCTGCGACTATTGCAATAAGTCGTTTACCAACAAGAACAATATTCTAATTCACTTCAGGGTGCACACTGCACAAGCTGGGGCTGCTGTAAAGGACGATTCTTATCTCTGTGAGATTTGTAAACGATGGTACAATTCGATTAAGGCCTTCCACGATCATCAACGGAAAAAACATGCCATCTATCAAAAGACTCTCAGCAAAACTTTCAAATGTACCCTTTGCAATCGAGCCTATGCGATCAGAACTTCCCTCATTGGTCATCTTCGACGATTACATGGTATATTTCAGAAGAATTTATTGTTTGGCGTCTCAGAACCCGAATTCGTTCCAAATGAACTGCAATGCCAAGTGTGTAAGGAGATTTTTGACACAAAAGTGCTATTAAATGAGCATTTGCACAGTCACATTGGTGCAGACTTACTGAAAGATGATGTTGCTGTGGTGGTACCAGAAACAATGTACGAATGTAAACCATGCAATATAACGTATGCCTTGAGGCACTCCTATAAGGACCATCTGCGTAAGAAACATGCGATTTATACAAACCAGTCGGTGGAAGTATTCAAATGTGATCATTGCGACCAGAGCTACACTACTCTGGAATCATTGTACGAGCACATGCGAAGAAAACATGGAATTTGTCAAAAGGCAGCTGTGAAAGAACCCGAAAGAGACAATCAGTCAGATATGGAACAACATTTTGCCGTACCTGAGAAGCCTATAACCGCCTCCGACACATCATATAAGTGTACAATTTGCGAACGAAGCTTCAATCGGCGCAAAGCAATGGTGGATCATTTACGCCGTCAACACCACGTGTATCAAAATCGAAGTGCAAAATCCAAGGACGAAAAATGGCTTCCGCTGGATTATAAATGTGACATTTGCAGCAAACTATTTGCTAGTCAGCGTTCGCTTCTGAAGCATTTGCGTTTGTTCTGCACAAACGCAGACAAAGAACCATTCAAATGTTCTCAATGCAATGCATCGTTTCCGTCGCAAAGTCGCTTAAACACACACATGACGAGACATTCTGACCTTAAACCGTTCGGATGTGAGGTGTGCGGCCGAAGCTACAAAGACAAACGCACTTTGCAAGCACATCGCCTCTCGCACGGTGACAGAAAGCAACACCAATGCTACATATGTGGCATTCAATTTTACTCAAACACTATTATGAACACTCACATTCGACTGGTGCATCACAAGGGCGAAAAGCGATTCCAATGCGGGACGTGTGGAATGAAATTCCACACCGACCACCACCGAAAAAGGCACGAAATTCTTCACACTGGCCTGCGACCATATGCATGTACCATGTGCGACAAGAAGTGTTCAACGAAGAAAGCATTGAGCAATCATCAACTCATACATTCGGCGAAACCTTTGGATTGTAATGAACCGGGATTTGTATATATAGAATATTCCCAGCTGGATTAA
Protein Sequence
MLIQSEQRALQSKCAEMFRNIDTGQYAFICFHCGSCFEQFNQIHDHIEMEHNSTSKDIFAETEFIEMADESALIVKTELASNFGSEYNLSVEEEKNHTNVHLEELHDFVEEMTIKDELLHDSHVDDFGNNSSDSDVTEELKCKICQNSYKTKKLLNEHLRKLHSIFKPTKSINRKESVNPSAHNEPYKCNICGNQYYIKHSFTDHMRKKHSIFKYSRQNAAAATAVVAEYTCDYCNKSFTNKNNILIHFRVHTAQAGAAVKDDSYLCEICKRWYNSIKAFHDHQRKKHAIYQKTLSKTFKCTLCNRAYAIRTSLIGHLRRLHGIFQKNLLFGVSEPEFVPNELQCQVCKEIFDTKVLLNEHLHSHIGADLLKDDVAVVVPETMYECKPCNITYALRHSYKDHLRKKHAIYTNQSVEVFKCDHCDQSYTTLESLYEHMRRKHGICQKAAVKEPERDNQSDMEQHFAVPEKPITASDTSYKCTICERSFNRRKAMVDHLRRQHHVYQNRSAKSKDEKWLPLDYKCDICSKLFASQRSLLKHLRLFCTNADKEPFKCSQCNASFPSQSRLNTHMTRHSDLKPFGCEVCGRSYKDKRTLQAHRLSHGDRKQHQCYICGIQFYSNTIMNTHIRLVHHKGEKRFQCGTCGMKFHTDHHRKRHEILHTGLRPYACTMCDKKCSTKKALSNHQLIHSAKPLDCNEPGFVYIEYSQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-