Basic Information

Insect: Diadocidia ferruginosa
Gene Symbol: -
Assembly: GCA_027564275.1
Location: JANSTW010064311.1:328-2660[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00088 0.054 14.8 1.1 1 23 192 214 192 214 0.97

2 14 1.2 73 4.9 3.9 1 23 221 243 221 243 0.86

3 14 0.00017 0.01 17.1 1.2 2 23 351 372 350 372 0.96

4 14 0.00095 0.059 14.7 0.8 1 23 379 401 379 401 0.96

5 14 0.001 0.064 14.6 1.1 1 23 416 438 416 438 0.98

6 14 0.071 4.3 8.8 6.4 1 23 447 469 447 469 0.98

7 14 0.0015 0.089 14.1 1.7 1 23 475 498 475 498 0.95

8 14 0.006 0.37 12.2 2.9 1 23 504 526 504 526 0.98

9 14 8.7e-07 5.3e-05 24.2 1.7 1 23 532 554 532 554 0.96

10 14 0.014 0.87 11.0 1.2 1 23 560 582 560 582 0.99

11 14 1.2e-05 0.00071 20.7 0.4 1 23 588 610 588 610 0.98

12 14 1.2e-06 7.1e-05 23.8 0.5 1 23 616 638 616 638 0.99

13 14 6.7e-05 0.0041 18.3 3.9 1 23 644 667 644 667 0.98

14 14 0.086 5.3 8.5 2.0 1 23 673 696 673 696 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00088	0.054	14.8	1.1	1	23	192	214	192	214	0.97
2	14	1.2	73	4.9	3.9	1	23	221	243	221	243	0.86
3	14	0.00017	0.01	17.1	1.2	2	23	351	372	350	372	0.96
4	14	0.00095	0.059	14.7	0.8	1	23	379	401	379	401	0.96
5	14	0.001	0.064	14.6	1.1	1	23	416	438	416	438	0.98
6	14	0.071	4.3	8.8	6.4	1	23	447	469	447	469	0.98
7	14	0.0015	0.089	14.1	1.7	1	23	475	498	475	498	0.95
8	14	0.006	0.37	12.2	2.9	1	23	504	526	504	526	0.98
9	14	8.7e-07	5.3e-05	24.2	1.7	1	23	532	554	532	554	0.96
10	14	0.014	0.87	11.0	1.2	1	23	560	582	560	582	0.99
11	14	1.2e-05	0.00071	20.7	0.4	1	23	588	610	588	610	0.98
12	14	1.2e-06	7.1e-05	23.8	0.5	1	23	616	638	616	638	0.99
13	14	6.7e-05	0.0041	18.3	3.9	1	23	644	667	644	667	0.98
14	14	0.086	5.3	8.5	2.0	1	23	673	696	673	696	0.93

Sequence Information

Coding Sequence: ATGGATTTACCAGTAAATGAAATTGGTACCATACAAAATTTTGTGGAATTGTGTCGAATATGTTTGCAAAATAAAAATATCGAAGGCAGAGAAGGAATGGCTAAAATATTCGAAACTACCATAATATCATTAAATGTGTCACTTTGCGATTTGTTTTCATTATTTACCGCCCTACATATGGAACAAATCGATGGATTTCCCACACAAATTTGTACAAGTTGCCAAGATAGTCTTGTTGCATCGTACGAATTTCAACAAAAATGCATTAAAAGTGACCATGACATTCGTATGGCTTTAGGCTTTCCTGCACAAAAAACGGCAATCGAAGATAAATTTAAAACAAATTGTATTTTTGTTGCTGAAGTACCGTTCCCAGACTGTCTCGATAACTGCAAAATTAAGGATGAACTAGATGTGGATGGAACAGTGCAAGATGTTCCAGCGCCAGAAACGTCTGATGATGACGGCAAACCAAAAATATCGACATTCGATTTGAACGAATTAACGTCTTCTGATGATTCCGGAAATGCTGAAAAACAGCCGTCAGTTAAATTGAAAAAGAGAAAGAAAGTTTACGCATGTTTAATGTGCAATAAAATTTGTGATAAACCTTCCAGTTTATTGCGACATCAAACAATCCATGATCCTGACGGTAAACCGTTTGAATGTAAATATTGTAAAAGGCGATTTGCAGTCGAAAGGCGTATGCTTTGTCATCAAATGACCCATTTAGAGAATAAAttgcaactgattgatattccggttgacaaaaagcatgaaagaAAGCAGCAGTTGGCAACCAGTGGAAAAAATAAACTTAAAAGTTATTCTTTCGGGGACGATGACACTGATTCAGAAAGTTGTTCACAAAATAAACGTCTTAGTGATGTGAAAAAAGATTTAGTTGATTTTAAAAATAAAAAACCTAATGACGATCAGAAGAACATATCACAGTTAAGCGATGGCAGTGATAGCAGTAGTAGTAGCGGATCAGAGTATTCTGCACGTCCACGTCGCAGTAGAGCTGTATTAAATCAAAACCAAACACTCACTtgcgaaatttgcgctaaatcattttctaaacgttatcgtctgatgcgacacactcaaatacacaatcctgagggtaaaccatatgaatgtaaaatatgtAAAAGACGATTTGCCGTCGAAGCTCATATGATCCGTCATGAGCTAAATCATTCAGATGAGTTAGCATCGTCCGTTGAGGCAAAACCAAAAATATTTAAATGTACAGAATGTGGACGAGAATTTCTGAAACACCAAGCACTTGCATCACACATGAACGTTCACAAGCATATTACGAAAACTAAAATATTTTCTTGTAAATATTGCGAGAAAACTTTTCCGTCTTTGCGAAAGTGTACCAGACATTCTAAAACTCATGATGAATTAAAAATACATCGTTGTCATATTTGCGATAAAGCGTATGCGGCGAGAGGAGAGTTGTCCGATCACATTAAATTCAAGCATGAAGGCATCGCACCTTatgtttgcccaatgtgcaataaaggttttcaacatttatatgctcatacaattcacctgcgaactcatagcggtgagacgccttacttatgttcggattgtggtaagggattttgtgataatgctggtttaaagaaacacatgagatatcatagcaaaattaaaccatttCAATGTTCCGAATGTCCGAGTCAATTTCACACCAATGCAATACTAAAGGATcatatgctaacccatagtggtattaaaccctataagtgtgaatattgtggagttgcattttcaggcagaacttccttgaccgtgcacacacgattgcatacgggtgaacgaccttataagtgtaatgtctgcgaaaaaggatttatttcttctggtctggtaacacggcacatgcgaacacataccggtgaaaaaccatacacatgtgatttttgtggtcgtacgtttgccgaaaagtgtgatctaaacaaacataaacgtcgattacatgccgaatttaaagcatttcactgcgaacaatgtcCTGCCGAATTTCGCCTGAAAACTGAGTACCGAAAACACAACAAAGAAGTTCACAACATTATACAAAGATTAACGGTTAAAAGAAAACGAAAGTCAAAAAAATTGATGGAACCAAAACTTGAGCCTGCAGAGTGCGTTAATGTAGATGTCATGGTGACAGAGTCAATGGCGACGACAGAGCTAACTCAATAA
Protein Sequence: MDLPVNEIGTIQNFVELCRICLQNKNIEGREGMAKIFETTIISLNVSLCDLFSLFTALHMEQIDGFPTQICTSCQDSLVASYEFQQKCIKSDHDIRMALGFPAQKTAIEDKFKTNCIFVAEVPFPDCLDNCKIKDELDVDGTVQDVPAPETSDDDGKPKISTFDLNELTSSDDSGNAEKQPSVKLKKRKKVYACLMCNKICDKPSSLLRHQTIHDPDGKPFECKYCKRRFAVERRMLCHQMTHLENKLQLIDIPVDKKHERKQQLATSGKNKLKSYSFGDDDTDSESCSQNKRLSDVKKDLVDFKNKKPNDDQKNISQLSDGSDSSSSSGSEYSARPRRSRAVLNQNQTLTCEICAKSFSKRYRLMRHTQIHNPEGKPYECKICKRRFAVEAHMIRHELNHSDELASSVEAKPKIFKCTECGREFLKHQALASHMNVHKHITKTKIFSCKYCEKTFPSLRKCTRHSKTHDELKIHRCHICDKAYAARGELSDHIKFKHEGIAPYVCPMCNKGFQHLYAHTIHLRTHSGETPYLCSDCGKGFCDNAGLKKHMRYHSKIKPFQCSECPSQFHTNAILKDHMLTHSGIKPYKCEYCGVAFSGRTSLTVHTRLHTGERPYKCNVCEKGFISSGLVTRHMRTHTGEKPYTCDFCGRTFAEKCDLNKHKRRLHAEFKAFHCEQCPAEFRLKTEYRKHNKEVHNIIQRLTVKRKRKSKKLMEPKLEPAECVNVDVMVTESMATTELTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -