Dfer005462.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010113442.1:8228-13095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2 75 4.9 0.3 3 23 208 229 206 229 0.89 2 18 0.33 20 6.7 0.2 6 23 238 255 238 255 0.99 3 18 0.0011 0.066 14.5 3.3 1 23 261 283 261 283 0.96 4 18 0.00078 0.048 15.0 3.7 1 23 291 314 291 314 0.97 5 18 0.00097 0.059 14.7 3.5 2 23 321 343 320 343 0.95 6 18 0.00045 0.028 15.7 0.7 2 23 351 372 350 372 0.95 7 18 0.0022 0.13 13.6 0.3 2 23 381 402 380 402 0.97 8 18 0.041 2.5 9.5 1.8 2 23 408 430 407 430 0.97 9 18 0.048 3 9.3 0.2 1 14 435 448 435 452 0.85 10 18 0.16 9.7 7.7 0.6 3 23 654 675 652 675 0.94 11 18 1.8e-06 0.00011 23.2 2.0 1 23 707 729 707 729 0.96 12 18 0.021 1.3 10.4 0.5 1 23 737 760 737 760 0.97 13 18 3.4e-06 0.00021 22.4 1.6 1 23 767 790 767 790 0.94 14 18 9.9e-05 0.0061 17.8 0.7 2 23 797 818 796 818 0.96 15 18 0.24 15 7.1 1.9 2 23 827 848 826 848 0.96 16 18 0.0037 0.23 12.8 0.2 3 23 855 876 854 876 0.96 17 18 0.00041 0.025 15.8 1.7 1 23 881 903 881 903 0.96 18 18 0.1 6.2 8.3 5.9 1 23 909 931 909 932 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAATCTAAAATATGCAGACTTTGTCTTACGCAAACCGAAAGTTATATTGATATATTTAGTGAGATAGGCAATAGACTACACATTGCCTCAATATTGGCACAACATTTTTGGTTCCAGGTAAATGAATTTGATGGGCTCTCTCAGAACATTTGCACTCGATGTTGGACGGATACGGGAAACTTTCATGAGTTTTACATTAAAATTGAAAATATACAAAAGAATTATATTGTAACAACACCGCAACTCTATACAAATGATGATCGAATTAAACTAGAACCGGAAAGTTTCGTCAATGAAAATTCGGATGAGAAATACTCGGAACACAAAGAACCTTTATTTGAAAAGGTTGAGATAATCGAAGAAAAACTGCCGGAGAGAATTAAGGTTGATAATTCGGATGACGACTTTTACTTCAATGATTATAAAGATTCCGTAAAAAGCTCAGAAGAAAGCAGCGAAGATTCAGATAATGAAGTGAAACCCACAATAGGTAAAAAAGCAAGTGTGTCTAAATCTAAAAAAAAAGTTAAAAAAGATATTGAAGAGGAAAATAGTTCAAGGGGAGATAAGATACGTTCAGATAATCAACGAATCCGGGACTTCGTTAATATGAATTGCGACAAGTGTGACACACAATTTCCAACATTTGCAAAAGCTCTTGTTCACTATGATAAGATCCATAAAACGAATGGTTACCTAATGTGTTGCGATACAAAGTACATAAGGAAAGATCGTCTCTTAGAGCACATACAACGTCATATAAATCCAAATGAACACAGATGTCATCCTTGTAATAAAATATTTGTCGATAAATATTCGTTGAAAAACCACATTGCAAACCATGAACCATTCGAAAGTAGATCTTATAAATGTAATCAGTGTCCAAGTAGTTTTACCGAAAAATCTAGATTAAATTCACACATTCGACATTATCACAAAGCAAAAGAAGATCTTATATGTGACATGTGCCAGAAACACTTTAAATCGAAAACTAGTCTAACGTATCACTTTCGTAGTGTTCACGAAACACGTAATGATGTTCTAGTTTGTGAAATTTGTGCAAAAGTTTTTACAAGCAAGCATGTACTTCGAAATCATCAGCTAGACCACGCAGACGGACCACGGCAACAATTGCAATGTAATGTTTGCGGGGCTTGGCTAAAAAATGCATACAATTTACGTAAACATTTAAAGCGACATGCTGATACAGTGCAAACGTGTACAATATGCAACAAGCAGTTACTAAATAAACATTCATTAGTTACTCACATACGAAGTGTGCATCGTGAACGATCTTTtaaatgtacgttgtgtgataaggcatttaaaaaagccgttgtattgaagGTCAATGAACATGATGGATTCTCTCAGAACATTTGCATTAACTGCTGGACAGATACGGACAATTTTCATGAATTTTACTGCAAAATCGAAAATATTCAAAAGAAAATTAATTTTGAAAAAACATCTTCTCAAATCAATGCTAATAATAGTAAAGGAATTAAACTAGAACCAATGCTAGAGCCCATCGTCAGCTTAGAAACTCTTGATCTTGATAAGTTGGATTACAAAGTGCATCCGATTGCAAAAGTCGAGATATTAGAAGATAGAACGCTAGAAGAGATTAGGTTGGACAGTTTCGAAAATGCAGATGATGATCTAAGTATTAAAACAGGGGGTACAGATTCGTCTGATTTCGAGAATGTAGATGATGATATAGCAATCGATAAAGATTCTACGGATAAGAAGAAAAGTTCAGATGAAAGCAGCGATGATTCATCTTTAAAATATAAAGCAAAACGTGGACGTAAGAAAAAAGCAAAAATTTACAAATATAAGAAAATTATCAAAACCGAAGACAATTCAAATACCGAGGAGACCAATGAAGCAAAAGGAGCTAAAAAAATACAACAAGATGATGAGCAAATTCTGAAATTTGTTGGTATGAATTGCGAATTGTGTGATGAAAAATTTGTTAAATTTTCAAAAATGCTAATTCATTATACCAAGATCCATGGAACTAATGGTTACGTAACGTGCTGTACTACAAAGTTTTTTCGAAAAGAACGAATTTTGGAGCACATTGATCTACATATAAAACCTAATGAATTCAGATGTCATATTTGTGATAGAATGTTTCCTCGTAAATATGCACTAAAAAGACACATTGGCAACCACGAACCCTACGAAAATAGAAAATATAAATGCGATCAATGTTCAAGTAGTTTTAACGAAGCCGCTATACTTAAAAAGCATATTCGCCTGTATCATGAGGAGATCACGAAAGATTTCTTATGCACCAAGTGCCAGAAAAATTTTACATCCAAATCTAATTTGGCTCAACACATTCGCCAGGTTCATGAAAAAGTTTATGCACAAGTTTGTGACATTTGTGCAAAGACATTTACAACCAGACATGCACTCATCAATCATCAATTAGAACACTCAGAAGGCATTCGTCCCAAATTGCAATGTAATCTTTGTGGATCATGGCTAAAAAATGCCCAATGTTTGCGAAGGCATATTAAGCGACATACGGATGAAGTAAAAATATGTAAAATATGCAACAAACCGTCACAAAATGCAGATTCATTAAGCAGCCACATGAGTAGTGTACACGGAGAACGAACGCATAAATGCACGGTGTGTGATAAAGCCTTTAAGAAAGCTGTTGTATTGAAGGAACACATGACCTTTCATACTGGCCAACAACAGCATAAATGTTTATATTGTCCAAAAACATTTAGAATTAATTCGGCTAAGTACATTCATACTAAAAGACATCATTACGAGCAATTTCTTCAAAATCGTGTGAGTCGAAATATACTTCTTAAAAAACCTGATAAAATTGAGGAGGATAAAACTGAATAA
- Protein Sequence
- MSESKICRLCLTQTESYIDIFSEIGNRLHIASILAQHFWFQVNEFDGLSQNICTRCWTDTGNFHEFYIKIENIQKNYIVTTPQLYTNDDRIKLEPESFVNENSDEKYSEHKEPLFEKVEIIEEKLPERIKVDNSDDDFYFNDYKDSVKSSEESSEDSDNEVKPTIGKKASVSKSKKKVKKDIEEENSSRGDKIRSDNQRIRDFVNMNCDKCDTQFPTFAKALVHYDKIHKTNGYLMCCDTKYIRKDRLLEHIQRHINPNEHRCHPCNKIFVDKYSLKNHIANHEPFESRSYKCNQCPSSFTEKSRLNSHIRHYHKAKEDLICDMCQKHFKSKTSLTYHFRSVHETRNDVLVCEICAKVFTSKHVLRNHQLDHADGPRQQLQCNVCGAWLKNAYNLRKHLKRHADTVQTCTICNKQLLNKHSLVTHIRSVHRERSFKCTLCDKAFKKAVVLKVNEHDGFSQNICINCWTDTDNFHEFYCKIENIQKKINFEKTSSQINANNSKGIKLEPMLEPIVSLETLDLDKLDYKVHPIAKVEILEDRTLEEIRLDSFENADDDLSIKTGGTDSSDFENVDDDIAIDKDSTDKKKSSDESSDDSSLKYKAKRGRKKKAKIYKYKKIIKTEDNSNTEETNEAKGAKKIQQDDEQILKFVGMNCELCDEKFVKFSKMLIHYTKIHGTNGYVTCCTTKFFRKERILEHIDLHIKPNEFRCHICDRMFPRKYALKRHIGNHEPYENRKYKCDQCSSSFNEAAILKKHIRLYHEEITKDFLCTKCQKNFTSKSNLAQHIRQVHEKVYAQVCDICAKTFTTRHALINHQLEHSEGIRPKLQCNLCGSWLKNAQCLRRHIKRHTDEVKICKICNKPSQNADSLSSHMSSVHGERTHKCTVCDKAFKKAVVLKEHMTFHTGQQQHKCLYCPKTFRINSAKYIHTKRHHYEQFLQNRVSRNILLKKPDKIEEDKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -