Dfer026368.2
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010024785.1:10905-14639[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.062 3.8 9.0 0.9 1 21 296 316 296 319 0.90 2 14 0.00058 0.035 15.4 0.7 2 23 325 346 324 346 0.97 3 14 0.27 16 7.0 4.7 3 23 351 372 349 372 0.94 4 14 0.00012 0.0074 17.5 2.3 1 23 379 402 379 402 0.95 5 14 5.5e-06 0.00034 21.7 4.4 2 23 409 430 408 430 0.97 6 14 0.0039 0.24 12.8 3.3 1 23 437 459 437 459 0.98 7 14 7.2e-06 0.00044 21.4 0.6 1 23 465 487 465 487 0.96 8 14 0.0019 0.12 13.7 0.3 2 23 507 529 506 529 0.95 9 14 0.0062 0.38 12.1 4.5 2 23 544 565 543 565 0.97 10 14 0.00032 0.019 16.2 4.2 1 23 568 590 568 590 0.97 11 14 4.2e-05 0.0026 18.9 0.5 1 23 597 620 597 620 0.95 12 14 0.0055 0.34 12.3 3.6 1 23 626 649 626 650 0.95 13 14 1.5e-06 8.9e-05 23.5 1.3 1 23 655 677 655 677 0.98 14 14 0.00033 0.02 16.1 0.9 1 21 683 703 683 704 0.96
Sequence Information
- Coding Sequence
- ATGAATGATTTTTATATCAAAAATGAACATTTGGTCCTGCAGAGCACGTACGATTTGTGCCGATTTTGTTTGTGTGTTAAACAAAATATGCGGAGAATTCCCCACGAAAACCTGCCCAACTCCAACATACCCGCAATATATTTGGCAGCAACGACATTGGAGTTACAATTTCGAGATGATTATCCCGAATATATATGCCCAAAATGTGAGAAGAACTTACTATTAGTTGCTAAAATACGAAAGGATCTACTTAAAGTTGATGCATTTTGGAAAACCTTTCTCCAACGTCACTCCGACTACCATTTAAATAAAAAGAAAACTCCACCTGATGTGGACTGCTCATCGCATCATGTCGAATTATCTGAAGGGGCAAAGCAAATCACAACAACTGAACCAGTCTTACATATAATTGATCACACAGCCTTAAATGGAACTAGTACAAATTTTTTAGAATCACATTTTATAACGAACAATAATCCTTTGATAGATCAAACAAATGTAGAACAGCAAGTGCCATTAGAACATGAGATTGTACAGAAAATTGAGGAATCCTACGTTTTTTGCGATGTTCAAGAAAATGATCCAAGCTTTGTTACGGCAGAACCAAAAACTCCAATGCCAATTGAAGAAATTAAAATTGAATCATATGAGCTGATTGATGATGTTAAGGATGAGGAGCACAAAAATGAAGATGATAACATTGGAACCGATGATGGATTTGTAGACGATGCTAATAATGAAGTGCTTGACGAAAAACCAATAATCGTAGATAGTCAATCAGCAAATGATAAGCTAATTTCTGACTATTATATGAGACAGAAAAATAAATATCCAAAGCAGAGAAATATCAATGGAATAACTGCGGTATGTGGCAAGGATAAACCATTCAAATGTTTCGAATGTGATGAAGAATTTGATGAAATCAGCAGTCTACAcgaacatacatttgacgtgcattcaattgtacaaatgtcttgcgatgaatgcaatcaaatatttttcaAAAAGGGCGAGTTACGGCTGCATGTAAAGACGCATATTGAAAAATGTTGTGAATTCTGCAAACGTTATTTTTCAACCATatcccgttggaaGACTCACATGAAAGAAAATCATGACGGTGGCAATAAGACGTTCACTTGTAATCTGTGCAATAAAACTTTGAAAAATTCTGACTCATTTAAAAAACATATCAGTCTGACGCATTCGGGTAACATGAGATTGGTTtgtcatatttgtggaaaaacgtgtaaaaattcacaatatcttaaggtgcacttaaggacgcacgttgaaaaagcgaaggcatttaagtgctcgtattgtgagaaggaatttaagttaaaatattcaaagaagttgcatgaacgtgttcataccggcgaacgtccttaTATGTGTGATATTTGTGGCTTTTCATTTACCCAACGTGGTCTGCTGCAGCGACATAAAGAGCTCCATAATCGTCCGAAGCAAAAGAAGAAGCCTCGCCTAATTAATGTCGAACATGGAAATGTAAAGTGTGACATTTGTGATGCAACATTTTCAAATATCATAAATATGAAAAGTCATTTGGACAAGAAACATAAACATTTGGGAACGGCCATTTGGGAGGACAAACTAAATACGACCTGCATGAAATGCCATCTTACATTTACCGACACTGATAAATTGAACGAACACAAAAAGACACATTTGGAATTTATTTGCCACATTTGTAAGCAGCGTTACAGTAATGCTCGATCGTTGGAGCATCACATTTCAAAACATGCCGATAAAGAACGTCCGTTCAAGTGTGATGTTTGTGGTGCAGCATACATTCGTAAATCTCATTTGGCTCAACATTATCAAGGTATGCACACGAACATTCGGCCGCATGTCTGTATGTTCTGTAGCAAGGCATTTGCACAAACATTCCAAttgaaaacacacataaaattggtgcatcacaaagagaaaccgtacaaatgtgacgaatgcgacaaggctttttcaacgtccgttcagctaaatcaacacaaacaatatcacacgggcaaatttttgtaccagtgtctggtctgtgagaaatgtttcaTTAGCGGTTCGGCACTGACTAAACATACGCGGAATAGTAAATCTTGTCGTGGAAAATTGCCATCGAATCGGGGACCGTTACCACCGCCATTAGTACCTATTTCTCAGCCGCCATTAGCGGTACCTGAACCGATTGAAACAATGCCGGTAATTGTTGAAGCAACAGAAATCATTACCGCAACACCAATTATAACATTAGCTTTACCCATTGACGTGCATAAAAATATGGAGCAAATGACTCCTCATCAGTCACAAAGGCAAGTCTATTACACATCAATATAA
- Protein Sequence
- MNDFYIKNEHLVLQSTYDLCRFCLCVKQNMRRIPHENLPNSNIPAIYLAATTLELQFRDDYPEYICPKCEKNLLLVAKIRKDLLKVDAFWKTFLQRHSDYHLNKKKTPPDVDCSSHHVELSEGAKQITTTEPVLHIIDHTALNGTSTNFLESHFITNNNPLIDQTNVEQQVPLEHEIVQKIEESYVFCDVQENDPSFVTAEPKTPMPIEEIKIESYELIDDVKDEEHKNEDDNIGTDDGFVDDANNEVLDEKPIIVDSQSANDKLISDYYMRQKNKYPKQRNINGITAVCGKDKPFKCFECDEEFDEISSLHEHTFDVHSIVQMSCDECNQIFFKKGELRLHVKTHIEKCCEFCKRYFSTISRWKTHMKENHDGGNKTFTCNLCNKTLKNSDSFKKHISLTHSGNMRLVCHICGKTCKNSQYLKVHLRTHVEKAKAFKCSYCEKEFKLKYSKKLHERVHTGERPYMCDICGFSFTQRGLLQRHKELHNRPKQKKKPRLINVEHGNVKCDICDATFSNIINMKSHLDKKHKHLGTAIWEDKLNTTCMKCHLTFTDTDKLNEHKKTHLEFICHICKQRYSNARSLEHHISKHADKERPFKCDVCGAAYIRKSHLAQHYQGMHTNIRPHVCMFCSKAFAQTFQLKTHIKLVHHKEKPYKCDECDKAFSTSVQLNQHKQYHTGKFLYQCLVCEKCFISGSALTKHTRNSKSCRGKLPSNRGPLPPPLVPISQPPLAVPEPIETMPVIVEATEIITATPIITLALPIDVHKNMEQMTPHQSQRQVYYTSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -