Basic Information

Insect: Diadocidia ferruginosa
Gene Symbol: -
Assembly: GCA_027564275.1
Location: JANSTW010018307.1:247-2597[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.2e-06 7.3e-05 23.8 2.5 2 23 177 198 176 198 0.97

2 13 0.00069 0.043 15.1 1.1 1 23 205 227 205 227 0.97

3 13 4e-05 0.0025 19.0 1.6 1 23 256 279 256 279 0.97

4 13 0.00027 0.016 16.4 1.1 1 23 282 304 282 304 0.95

5 13 1.9e-05 0.0012 20.0 2.5 1 23 355 377 355 377 0.98

6 13 0.01 0.64 11.4 1.7 1 23 384 406 384 406 0.97

7 13 0.001 0.063 14.6 0.3 1 23 421 443 421 443 0.97

8 13 0.00078 0.048 14.9 3.4 1 23 452 474 452 474 0.99

9 13 1.8 1.1e+02 4.4 0.1 13 23 481 491 479 491 0.92

10 13 0.00047 0.029 15.6 0.2 1 23 497 520 497 520 0.95

11 13 0.0016 0.097 14.0 0.8 3 23 533 553 531 553 0.97

12 13 3.2e-06 0.00019 22.5 0.6 1 23 559 582 559 582 0.97

13 13 0.0068 0.42 12.0 2.3 1 23 587 610 587 610 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.2e-06	7.3e-05	23.8	2.5	2	23	177	198	176	198	0.97
2	13	0.00069	0.043	15.1	1.1	1	23	205	227	205	227	0.97
3	13	4e-05	0.0025	19.0	1.6	1	23	256	279	256	279	0.97
4	13	0.00027	0.016	16.4	1.1	1	23	282	304	282	304	0.95
5	13	1.9e-05	0.0012	20.0	2.5	1	23	355	377	355	377	0.98
6	13	0.01	0.64	11.4	1.7	1	23	384	406	384	406	0.97
7	13	0.001	0.063	14.6	0.3	1	23	421	443	421	443	0.97
8	13	0.00078	0.048	14.9	3.4	1	23	452	474	452	474	0.99
9	13	1.8	1.1e+02	4.4	0.1	13	23	481	491	479	491	0.92
10	13	0.00047	0.029	15.6	0.2	1	23	497	520	497	520	0.95
11	13	0.0016	0.097	14.0	0.8	3	23	533	553	531	553	0.97
12	13	3.2e-06	0.00019	22.5	0.6	1	23	559	582	559	582	0.97
13	13	0.0068	0.42	12.0	2.3	1	23	587	610	587	610	0.90

Sequence Information

Coding Sequence: ATGGATTTTCAAATAGGTGGAAGTAGCTTGGTGGATGTGTGTCGAATATGTTTGCAGAATAAAAACAATGAAATCGGCGGCTACCAGCGAATGACCGAAATGTCTGCAACAATAGATTCAATAAATATTTCATTATTCGAATTGTTTTTCACATTTGCTGGTCTACCAATGGACCAAGCTGAAGGATTTCCAAGACAAATTTGTGAAAATTGTCAAGACACATTAGTGTTGGCCTATGAATTTAAGATGAAATGTCTTCAAAGTGACCAAAACATTCGTATGGCTTTGGAAAATTCAGACACTAAGCCAATACTAAATGATCCAAACAAAACGGAACAGCATGTCGAAGAGATGAGTATACAGAATTATGACAATGATCTTCTGTTTAAAGATGAACTTGGTATATCCTCAGAAATATGGACAGAACCACTTAATATCAATGAATCTTCAAACTCATCACAGCAATTTGAACCACCCATTGGTGCTGATTCTTCGTCAAAATCCTTAGAAATTAGAAAAAAGAATAAAAAATGTGAATTTTGTAATAAAACGTTTTATagaagttataatctgaatcgtcatatggacattcataaacctgaaggaaaaccatttgaatgtaaaatatgtaaAAGACGATTTGCTGACGAAAGTCGGATGAAGCTCCATCAAGAGAACCATAGTTTTGACGACTTGCCATCAGTGAAAATGGAGGAGGCTGCTGACGGTGATGAAATGAAAATATTGCAAAAGAAGAAAAATATATATGAATGTTTGGTTTGTGATAAATCGTTTGCGAAACCTTCTCTTCTGTTTCATCATTCAAAAAAAGAGCATAAAAAATTCCAATGTAAAATATGTAAACAAAAGTTTATGGATAAAAGCAGTTTGATTTATCATGAAATTTTACATTCAACAAACATGCTGGACGTTGTTCCAGAATCAACAGCCGATCAACAAAGCGAAGACTGCCAGGAGGATGATGTCCTTGTAAAATCAAATGAAATAAGCGATGTTTCTGCAATCGAACCGTCTTCTAAAGTCGCAAAAGGAAAAAAACAATACATATGCCAAGTTTGTAACAGAACCTTTAGTAAAGGTTCTCACTTGATCCGCCACTACAAAGTTCACGATCCTGAGGGTAAACCATTCGAATGTAAGTTCTGTAAAAGACGATTTGCTGAAGAAAGACTTTTGATGAGTCATGAATTCACACATTCGAAAGATCTAATGCGTTCTAAAAGAATAAACCACAAATTCTATGAATGTCCAGATTGTCCACGTGAATTTTTAAATAAAGATTCACTTTCATCTCATTCAAAGTTACATCAGGCTGGTCATAACCAAAATGTTTATACTTGCGAACATTGCAAGAGTATATATTCTGAACAGTCCAATTATTCACAACATATAAAGACACATATTAATCCGAAAATATTCTCTTCCGATTTAAAATGGCATATGACAACACACAGTGACATTAAAGCATTTAAATGTGATATTTGTGGAGCATCGTTTTCAGCACCAGGTGGATTGAGGCTTCATAAATATCGACGACATGATCCAGATGGGTTATCTAAAATTAAACGTTTGGCATGCAACTTGTGTGATCTGAAATTTCCAACTaaatatgcgctagcatgtcatattcgcacccacacgggtgaaaaaccatttaaatgtgaactttgtgaccgtgcatattcccaaagtggtgatctaaataaacatcggcggcaaattcacGGTCTCGATATTTTTAAGTGTAAGCAATGTCCGGCCTCATTTCAAATGCTCAGCGAATTAAAAAAACACAATCATCAGGTGCATTATTTACCGCAACCGGAAACAAGCAATACTATAGGTACAGCAACTGATTAA
Protein Sequence: MDFQIGGSSLVDVCRICLQNKNNEIGGYQRMTEMSATIDSINISLFELFFTFAGLPMDQAEGFPRQICENCQDTLVLAYEFKMKCLQSDQNIRMALENSDTKPILNDPNKTEQHVEEMSIQNYDNDLLFKDELGISSEIWTEPLNINESSNSSQQFEPPIGADSSSKSLEIRKKNKKCEFCNKTFYRSYNLNRHMDIHKPEGKPFECKICKRRFADESRMKLHQENHSFDDLPSVKMEEAADGDEMKILQKKKNIYECLVCDKSFAKPSLLFHHSKKEHKKFQCKICKQKFMDKSSLIYHEILHSTNMLDVVPESTADQQSEDCQEDDVLVKSNEISDVSAIEPSSKVAKGKKQYICQVCNRTFSKGSHLIRHYKVHDPEGKPFECKFCKRRFAEERLLMSHEFTHSKDLMRSKRINHKFYECPDCPREFLNKDSLSSHSKLHQAGHNQNVYTCEHCKSIYSEQSNYSQHIKTHINPKIFSSDLKWHMTTHSDIKAFKCDICGASFSAPGGLRLHKYRRHDPDGLSKIKRLACNLCDLKFPTKYALACHIRTHTGEKPFKCELCDRAYSQSGDLNKHRRQIHGLDIFKCKQCPASFQMLSELKKHNHQVHYLPQPETSNTIGTATD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -