Dfer028497.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010071451.1:5346-7346[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.85 52 5.4 0.2 1 23 18 41 18 41 0.91
2 16 1.8e-05 0.0011 20.1 2.2 1 23 134 156 134 156 0.98
3 16 0.0031 0.19 13.1 3.0 1 23 163 186 163 186 0.97
4 16 0.026 1.6 10.1 1.4 1 23 199 222 199 222 0.97
5 16 0.00038 0.023 15.9 0.5 3 23 231 252 230 252 0.95
6 16 0.00013 0.0081 17.4 1.8 1 23 322 344 322 344 0.98
7 16 0.0045 0.27 12.6 2.8 1 23 351 374 351 374 0.97
8 16 0.028 1.7 10.0 0.7 1 23 387 410 387 410 0.94
9 16 0.00026 0.016 16.4 0.9 3 23 419 440 418 440 0.95
10 16 0.00064 0.039 15.2 4.4 1 23 473 495 473 495 0.99
11 16 6.6e-05 0.004 18.3 1.3 1 23 501 523 501 523 0.98
12 16 0.0042 0.26 12.6 5.1 1 23 529 551 529 551 0.97
13 16 0.00011 0.0069 17.6 1.0 2 23 558 580 557 580 0.96
14 16 0.0006 0.037 15.3 5.9 1 23 585 607 585 607 0.97
15 16 1.9e-05 0.0011 20.0 0.8 1 23 613 635 613 635 0.97
16 16 0.0015 0.095 14.0 0.8 1 23 640 663 640 663 0.93

Sequence Information

Coding Sequence
ATGATTAAATGCAGCGAAATCTTTCGCAACAATTCGTCCGGAAAATATTGCTATTTTTGTTATCATTGTGGCAATGAGTACGATTCGGACGAACAGGTAATCGCTCATCTTGAAGCTGAACATATCGTAATCACCCGCGATGAGGATGCTGATGATAAATTTGAAGAAACATATTATCTCGAAGAAGGTATAAGTAATGATCTGAAAATACAAATAAACCAAGAGGAGACTTCATTTCAAAATTATGAAAGTTCAACTTATTATGAAGAGGTGCAGAGTAGCAACAGTGATAAGAATTCTTCTGATATATTCTCAAAAGAAGATCAAAACTGCATCAAAGGTGATGAACGCACACCGATCGAAACAATTCATATCAAAGAACAAGAAGTTACTAAAGAATATCACTGTGATTATTGCAAGGAAGTATTTAGGAACAAAAGTTTAATTAAAATTCACATGAATATTCACAAGGATGAGACGACAGTTTTTACTTGTAATTGGTGCAATAAAAAAGTGCATAAGAAACGAGCCTTGCAGGATCACATAAGACTATTCCATAACGTGGAATGGAGGTTGACAAATAAGTATGGTTCTTTTGTGTGTGAACTTTGTCCTAGTACTTTTACAACCAAACTAAAAGTAAAGGAGCACAAGAAAAAAATGCATCCAACAGGATCTCTGTCAAATAATTGTCAATACTGTGGCCGATATTTTTCATTACGCAATGCACTCAACAGACATGTAAGAGATGTTCACATCGCCAAAGGTAATCTGACAATACAAATATATCAGAAGACCTCATTTCAAAACTATGAAAGTTTAACTAATGCAGAGTTGAAAAGCAACTGTGACAATAATCCTGACAACATATTCTTAAATGATGATCAGTGTATCGTAGAAGGTGTGCCCAATGAATGCACACCGTTCGCAACAATTATCAAAGAACAAGTAGTTACTAAAGAATATCACTGTGATTATTGCAAGGAAGTATTTAGGAACAAAACTTTAATTGAACTTCACATGAATATTCACAAGGATAATGCGACAGTATTTTCTTGTAATTGGTGCAATAAAAAAGTTCATAAGAAACGAGCTTTGCAGGATCATATAAGACTGTTTCACAATGTGGAATGGAGATTAACAAATAAATATGGTTCTTTTTTGTGTGATCTTTGTCCAAGTAGTTTTACAACCAAAATTAAAGTAGAGGATCACAAGAGAAGAATGCATTCATCAGGATCTCTATCAAAAAATTGTCAATATTGTGGTCGATTTTTTTCACTACGCAATGCACTCAACAGACATGTAAAAAATGTTCATATTGCCAAAGATAATTTGGACATTACCGGCCAAAATTGTATTAAAACGCTCCAAGATATACAAAAATACCAACTGTTGCGCAAAAGCCTAAAATATTACAAGTGTGATGTATGTGATAAGGTTTTCCATAAAAGAGATTATTTTTTAATTCACAAGAAACGGCACACTGCCGATCGAGTACACAAATGTACAATTTGTTCAATGGCATTTGTTGACAAATTGTACTTAGCCAATcacttgaggacacacaataaaaataaaattcaccattgcgatttatgtgataaaagttacagtttagcatttacactgaaaatgcacagaagaagtcatacaggggaaaaaccaaatcagtgtccattttgcggacttaaattttaccgaactagtcaaatgaccacgcacatgaacaatgtacacagtgaaccgacgcatacatgtggaacatgtacgaagaaatttaccactgcccacaagttaaaaagacacgaacaaatacatactggtctaaggccattcaagtgtgaaacatgtgatcgaacatttgcacaacaaagaggattaagagctcataaattactgcatcaggaaaaacggtttaaatgtaagtattgtgatatggtatttgcccagccatctgGACGCAGGGGTCACGAAAAGAATAAACATATCCAAACATAG
Protein Sequence
MIKCSEIFRNNSSGKYCYFCYHCGNEYDSDEQVIAHLEAEHIVITRDEDADDKFEETYYLEEGISNDLKIQINQEETSFQNYESSTYYEEVQSSNSDKNSSDIFSKEDQNCIKGDERTPIETIHIKEQEVTKEYHCDYCKEVFRNKSLIKIHMNIHKDETTVFTCNWCNKKVHKKRALQDHIRLFHNVEWRLTNKYGSFVCELCPSTFTTKLKVKEHKKKMHPTGSLSNNCQYCGRYFSLRNALNRHVRDVHIAKGNLTIQIYQKTSFQNYESLTNAELKSNCDNNPDNIFLNDDQCIVEGVPNECTPFATIIKEQVVTKEYHCDYCKEVFRNKTLIELHMNIHKDNATVFSCNWCNKKVHKKRALQDHIRLFHNVEWRLTNKYGSFLCDLCPSSFTTKIKVEDHKRRMHSSGSLSKNCQYCGRFFSLRNALNRHVKNVHIAKDNLDITGQNCIKTLQDIQKYQLLRKSLKYYKCDVCDKVFHKRDYFLIHKKRHTADRVHKCTICSMAFVDKLYLANHLRTHNKNKIHHCDLCDKSYSLAFTLKMHRRSHTGEKPNQCPFCGLKFYRTSQMTTHMNNVHSEPTHTCGTCTKKFTTAHKLKRHEQIHTGLRPFKCETCDRTFAQQRGLRAHKLLHQEKRFKCKYCDMVFAQPSGRRGHEKNKHIQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-