Dfer013681.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010046257.1:10606-13134[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 62 5.1 4.8 1 23 32 55 32 55 0.95
2 18 0.014 0.88 11.0 1.7 1 23 112 135 112 135 0.98
3 18 0.00062 0.038 15.3 4.4 1 23 146 169 146 169 0.97
4 18 9.4e-05 0.0058 17.8 3.7 1 23 246 269 246 269 0.98
5 18 0.0057 0.35 12.2 4.5 1 23 293 316 293 316 0.98
6 18 5.2e-05 0.0032 18.6 3.7 1 23 347 369 347 369 0.98
7 18 0.075 4.6 8.7 0.7 1 23 382 405 382 405 0.95
8 18 0.00033 0.02 16.1 0.3 1 23 423 446 423 446 0.98
9 18 0.0014 0.084 14.2 0.9 2 23 468 489 467 489 0.96
10 18 0.33 20 6.7 1.0 1 23 506 529 506 529 0.97
11 18 0.009 0.55 11.6 8.2 1 23 540 563 540 563 0.98
12 18 0.00048 0.029 15.6 3.5 1 23 602 625 602 626 0.97
13 18 0.00013 0.008 17.4 0.4 1 21 645 665 645 666 0.97
14 18 4.3e-05 0.0026 18.9 0.4 1 23 676 698 676 698 0.98
15 18 1.3e-05 0.00079 20.5 2.1 1 23 704 726 704 726 0.97
16 18 0.00035 0.022 16.0 3.4 1 23 732 755 732 756 0.97
17 18 5.6 3.4e+02 2.8 0.4 1 11 762 772 762 784 0.84
18 18 1.8e-06 0.00011 23.2 2.6 1 23 790 812 790 812 0.98

Sequence Information

Coding Sequence
ATGGACATTACGATGATGATCCAATCGGCACAACGGGCCCTTCAATCAAAATGCGCCGAAATATTTCGCAACACCGACACAGGCCAGTATGCATTCATTTGTTTTCATTGTGGTTCCTGCTTTGAACAATTTAACCAGATTCACGATCACATTGAGATGGAACATAATTCGACATCCAAGGATATATTTGAAGACCTAGAATTTGAAATGGTTGAAAATGATAAGCCTGCAGATGAAACTGCCGCGACTGATAAAGATTATAGCTTGGGATCTAAAATGACCGAGTTTATTGAGCCGAGGGATGAGCCAAAACTGCAGACGCCCCAACGACCATACAAGTGTTCGCTTTGTAGTAATACGTACGAAATTTCTAAATCACTGCAAGATCATTTGCGAAGGAAACACGGAATATATCAAAGTAGCTCCAGGAAACCGTACAAATGTGAACATTGTGTCCGAACATTTTCGCTGAAAAAAACCCTAATAAAGCATAAGCGTCAGGAGCATCCCGGCGGTGACTCGGCTACGGTAATTGTTAAAACTGAATTGGCGAGCAGTAACTTTTGGAGTGAATGCAGCAATTTGAGTGTTAAAGAGGAAAACAACCATACAAATGTTTATCTTGAAGAATTGCAGGATTTTGGCGAAAAGATGACAATTAAAGATGAGCTATTACATGATAGTCACGTGGACGATTTTGGTAACTACAGTAGCGACTCTGATCAAATAGAAGAATTTAAATGTAAAATTTGTCAAAATTCGTATAAAACGAAAAATTCACTGAAAGAACATCTTCGAAAAACACATTCTGTTTTTGCGCCTAGAAAAACGATAATCGGAAAAGAATCCGTAAGCCCATCGGCGCATAATGAACCATATAAGTGTAACATCTGCGGTAATCAATACTACATTAAACACTCCTTTACCGACCACATGCGAAAGAAACATTCAATCTTTCAGACGTCTATCAGACTAAACTTAGCTGCTGCTACTGCAGTTGTTACAGACACACCAATGAATGAAATACCACTTGCCGAATACACCTGCGACCATTGTAATAAGACGTTTACCAGCAAGAACAACATTCTAATTCACTTCAGGGTGCACACCGCACAAGCTGGAGATGCAGCAAAGGACGATTCTTATTTATGTGAAATTTGTAAACGATGGTACAATTCGATTAAGGCCCTACGCGATCATCAACGAAAACAACATGCCATCTATCAAAATAACAAGACGCAAATCGACCAAACTCTCAGCAAAACTTTCCAATGTACCCTTTGCAATCGAGCCTATGCGATCCGAGACTCCCTCATCTCTCATCTTCGACGATTACATGGTGTCCTTCAAAAGAATGTCTTGTTTGGCGTCTCAGAACCCGAATTCGTTCCAAATGAACTACAATGCGAAGTGTGTAAGCAGATATTTGACACAAAAGTGCTATTAAATGAGCATTTGCACAGTCACGTTGGCGCAGACTTACTGAACGATGCTGTTACTGCACCAGAAACAAAGTACGAATGTAAACCATGCAATGTAACGTATGCCTTGAGGAAGTCCTATATGGACCATCTGCGTAAGAAACATTCAATTCGTAATAAACAGTCAGTGGACGTATTCAAATGTGATCATTGCGACCAGTGCTACACTATCCTGAAGTCTTTGCACGATCACATGCGAAGAAAACATGGAATTTATCAAACTGAAAAGGCAGCTGTGAAAGAACCCGAAAAAGACAATCGGTTAGATATGGAACAACATTTTGCCGCACTTGAGAAGCCTATAACCACCCCCGACCCATCATATAAGTGTACAATTTGCGAACGAAGCTTTAATAAGCGCAAAGCAATGGTGGATCATTTACGCCGTCGACACCACGTTTATCAAAATCGAAGTGCAAAATCCAAGGACGAAAAATGGCTTCCGCTGGATTATAAATGTGACATTTGCAGCAAACTGTTTGCTAGTCAGCGTTCGCTTTTGAAGCATTTGCGTTTGTTCTGTACAAACGCAGACAAAGAACTATTCAAATGTTCTCAATGCGATGCTTCGTTTCCGTCGCAAGGTCGCTTAAACATACACATGTCGCGGCACTCTGATCTTAAACCGCACAGATGTGAGGTGTGCGGCCGAAGCTACAAAGACAAAGGCACCTTGCAACAACACCGTCTCTCGCACAGTGGCAGAAAGCAATACCAATGCTACATTTGTGGCATTCAATTTTACTCAAACACTCATATGAACACTCACATTCGGCTGGTGCATCACAAGGGCGAAAAGCGATTCGAATGCGGAACATGTGGATTGAAATTCTACGCCGACTACCGCCGGAAAATGCACGAAATTCTTCACACTGGCCTGCGACCATATGCATGTACCATGTGCGACAAGAAGTTTACAACGAATAAAACATTGCGCAATCATCAACTCACACATTCGGAGAAACGATTTGAATGCCGCTGTTGCGGTAAAAAATTTACCCAATCCAGATCTCGGCTGACCCATGAAAAATATTGCCATAACACCTAA
Protein Sequence
MDITMMIQSAQRALQSKCAEIFRNTDTGQYAFICFHCGSCFEQFNQIHDHIEMEHNSTSKDIFEDLEFEMVENDKPADETAATDKDYSLGSKMTEFIEPRDEPKLQTPQRPYKCSLCSNTYEISKSLQDHLRRKHGIYQSSSRKPYKCEHCVRTFSLKKTLIKHKRQEHPGGDSATVIVKTELASSNFWSECSNLSVKEENNHTNVYLEELQDFGEKMTIKDELLHDSHVDDFGNYSSDSDQIEEFKCKICQNSYKTKNSLKEHLRKTHSVFAPRKTIIGKESVSPSAHNEPYKCNICGNQYYIKHSFTDHMRKKHSIFQTSIRLNLAAATAVVTDTPMNEIPLAEYTCDHCNKTFTSKNNILIHFRVHTAQAGDAAKDDSYLCEICKRWYNSIKALRDHQRKQHAIYQNNKTQIDQTLSKTFQCTLCNRAYAIRDSLISHLRRLHGVLQKNVLFGVSEPEFVPNELQCEVCKQIFDTKVLLNEHLHSHVGADLLNDAVTAPETKYECKPCNVTYALRKSYMDHLRKKHSIRNKQSVDVFKCDHCDQCYTILKSLHDHMRRKHGIYQTEKAAVKEPEKDNRLDMEQHFAALEKPITTPDPSYKCTICERSFNKRKAMVDHLRRRHHVYQNRSAKSKDEKWLPLDYKCDICSKLFASQRSLLKHLRLFCTNADKELFKCSQCDASFPSQGRLNIHMSRHSDLKPHRCEVCGRSYKDKGTLQQHRLSHSGRKQYQCYICGIQFYSNTHMNTHIRLVHHKGEKRFECGTCGLKFYADYRRKMHEILHTGLRPYACTMCDKKFTTNKTLRNHQLTHSEKRFECRCCGKKFTQSRSRLTHEKYCHNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-