Dfer014060.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010020751.1:1-6101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.042 2.6 9.5 0.2 1 23 37 60 37 60 0.91 2 15 5.7e-07 3.5e-05 24.8 2.0 1 23 162 185 162 185 0.98 3 15 0.013 0.77 11.2 0.6 1 23 198 221 198 221 0.96 4 15 0.0001 0.0063 17.7 0.6 3 23 230 251 229 251 0.95 5 15 2.6e-05 0.0016 19.6 1.4 2 23 330 352 329 352 0.96 6 15 5.5 3.4e+02 2.8 0.5 1 23 365 388 365 388 0.90 7 15 5e-05 0.0031 18.7 0.3 3 23 397 418 396 418 0.96 8 15 0.84 51 5.4 0.1 1 23 506 529 506 529 0.91 9 15 2.1e-05 0.0013 19.9 1.4 2 23 626 648 625 648 0.97 10 15 0.011 0.67 11.3 0.4 1 23 661 684 661 684 0.91 11 15 0.00025 0.015 16.5 1.0 3 23 693 714 692 714 0.97 12 15 2.4e-05 0.0015 19.7 1.2 1 23 786 808 786 808 0.98 13 15 8.8e-06 0.00054 21.1 0.6 2 23 816 838 815 838 0.97 14 15 0.18 11 7.5 1.5 1 13 851 863 851 874 0.84 15 15 4.2e-05 0.0026 18.9 0.3 3 23 883 904 882 904 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAAATCTATCTTGAAAGTATCAAAATTGAACCATCACTGGATGAACCACATTCGATAAAATGTTGTGAAGTATTTCGCGACAACTCTTCCGGAAAATATTGCTATTTTTGTTATCATTGTGGCAAAGAGTACGAttcggacgaacaagttatcgctcatctggaagctgaacatgttctaaagaccgacgaggatgttaatCTCGATGTTAATTGTAAATTTGAAGAAATAAATCTCAAAGAAGGTGTAAATACTGATCTGAAATTGGAAATAATCCAGGGGAATTCATTTAAAAATAATGAAAGTTCATTAAACTTTTATGATGAGTTGAGTATCAATAGTGACAAGAATCCTTCCAACATATTATTCTCAAATGATGATCAATGTATCGAAGACGGTGTGTCTGTTGAATCTATACCAAACAAAACAATTACTAAATCAAATCATATTATTGTTAACCAGGATAATACGACAGTATTTACTTGTAATTTGTGCGGTAAAATTTTCCGTAAGAAACGAAACTTACAGGATCACATAAGGAGGTCACATAACGTAGAATGGAGAAAAACAAACAATTATGAATTTTTTGTGTGTGATATTTGTCCCAGTAGTTTTACAACCAAACTTAAGGTAGAGGATCACAAGAAAAGAATGCACTCAGCAGAATCGAAGTCAAAAAATTGTCAATACTGTGGTAAATATTTTTCATTACGTGGTTCACTTACCAGACATGTCAGAGATGTTCATATGGCCAAAGGTAATCTTAAAATACAAATAAATCAAGAGTCCTCATTTAAATGTAATGAAAGTTCAAATAAATGTTATGAAGAGTTGAATAGCAACAGTGACAAGAAACCTTCCAACGAATTCTCAAATGATGATCAAAGCATCGAAGCAAGTATGCCTATTGAATCCATACTGACCAAAACAATTACTAAATCAAATCACTTGATTGTTAACCAAGATAATTCGACAGTATTAACATGTAATTGGTGCGATAAAAATTTCGTTAAGAAACGAACCTTACAGGATCACATTAGAAGATCACATAACGAGGAATGGAAAATAACAAATAATTATGGTTCTTTTTTGTGTGATATTTGCCAAAGTACTTTTTTAACCACAGTTAAATTAGAGGATCACAAGATAAGAATGCATTCAACAGAATCGCAGTCCAAAAATTGTCAATACTGTGGTAAATATTTTTCATTACGTGGTTCACTTGCCAGACATATAAGAGAAGTTCATAAGATTGTCGATCAAAATTGGAATATAAAATGTCGGAGATTATCAGCGGCAACCCTGAAAGCAGCAGCTGGGAAACATAAACAAAAAACCACAACAATAATATTTGTGTCCGTAAAATTAGTAAATAATATTACTGTAATTTCTGAAATTATGGAGCAAATCTATTTTGATAATATAAAAATTGAGCCTTCGCCAGCTGAGGAGCCACATTTAACGAAATGCAGTGAAGTTTTTCGCAACAATTTATCCGGAAAATATTGCTATTTTTGTTATCATTGTGGCAATGAGTACGTTTCGGACGAACAAGTTATAGCTCATCTTGAAGCTGAACATGTTCTGAAAACCAACGAGGATGTTGATGTTAAATTTGAAGAAATAAATATCGAAAACAGTGATAATGATCTGAATTTGCAAATAAGCCAGGAGAATCCATTTCAAAATAATGAAAGTTCAATAAACTTTTACAAAGGCTTGAGTAGCAACAGTGATAAGAATCTTCCCAACATATTCTCAGATGATGATCAATGCATCGAAGCAGGTGTACCTATTGAATCCATACCGACCAAAATAATTACAAAATCAAATTACATGAATGTTCAGCAGGATAATGGCACAGTATTAACATGTAATTGGTGCGATAAAATGTTCGGTAAGAAACGAAACTTACAGTATCACATAAAAACTTCACATAACGTGGAATGGAGAAAAACACACAATTATGGCTATTTTTCTTGTGATATTTGTCCCCGTAGTTTTACAACGGAACTTAAAGTAGAGTATCACAAGATAAGAATACATTCAACAGAATTACAGCCCAAAAATTGTCAATACTGTGGTAAATATTTTCCATTACGTAATTCACTTACCACACATCTAAGAAAAGTTCATCTTGCCAAACGTAATCAAAAAATACAGACAAGCCAAGATACCTCATTTAAATCTAATGAAAGTTCAAATAAAAATTATGAAGAGATGAATAGCAACAGTGACAAGAATTCTTCCAAATTATTCTCAAATGATGATCCGGCTATTGTAGAAGGTGTGCCTGATGAAGGCACACCGATCGAAACAATTATCAAGGAACAGACCGTTACTAAAAAATATTACTGTGATTATTGTCAGCAAGTATTTACGACTAAAAAATTGATTGCAAAGCACATGAATATTCATTGCGATAATGCGACAGTACTAACTTGTAATTGGTGCGATAAAATTTTTGTTAGGGAACGAAACTTACAGTATCACATAAAAACATCACATAACGTGGAATGGAGAAAAACACACAATTATGGTTATTTTTATTGTGATATTTGTCCTCGTAGTTTTACAACCGAACTTAAAGTAGAGTGTCACAAGATAAGAATACATTCAACAGAATCGCAGTCAAAAAATTGTCAATACTGTGGTAAAAATTTTCCATTAAGTGGCTCACTTACCAGACATCTAAGAGAAGTTCATAATATTGTCGACCAAAATCCGAATATAAAATGTCGGAGAT
- Protein Sequence
- MEQIYLESIKIEPSLDEPHSIKCCEVFRDNSSGKYCYFCYHCGKEYDSDEQVIAHLEAEHVLKTDEDVNLDVNCKFEEINLKEGVNTDLKLEIIQGNSFKNNESSLNFYDELSINSDKNPSNILFSNDDQCIEDGVSVESIPNKTITKSNHIIVNQDNTTVFTCNLCGKIFRKKRNLQDHIRRSHNVEWRKTNNYEFFVCDICPSSFTTKLKVEDHKKRMHSAESKSKNCQYCGKYFSLRGSLTRHVRDVHMAKGNLKIQINQESSFKCNESSNKCYEELNSNSDKKPSNEFSNDDQSIEASMPIESILTKTITKSNHLIVNQDNSTVLTCNWCDKNFVKKRTLQDHIRRSHNEEWKITNNYGSFLCDICQSTFLTTVKLEDHKIRMHSTESQSKNCQYCGKYFSLRGSLARHIREVHKIVDQNWNIKCRRLSAATLKAAAGKHKQKTTTIIFVSVKLVNNITVISEIMEQIYFDNIKIEPSPAEEPHLTKCSEVFRNNLSGKYCYFCYHCGNEYVSDEQVIAHLEAEHVLKTNEDVDVKFEEINIENSDNDLNLQISQENPFQNNESSINFYKGLSSNSDKNLPNIFSDDDQCIEAGVPIESIPTKIITKSNYMNVQQDNGTVLTCNWCDKMFGKKRNLQYHIKTSHNVEWRKTHNYGYFSCDICPRSFTTELKVEYHKIRIHSTELQPKNCQYCGKYFPLRNSLTTHLRKVHLAKRNQKIQTSQDTSFKSNESSNKNYEEMNSNSDKNSSKLFSNDDPAIVEGVPDEGTPIETIIKEQTVTKKYYCDYCQQVFTTKKLIAKHMNIHCDNATVLTCNWCDKIFVRERNLQYHIKTSHNVEWRKTHNYGYFYCDICPRSFTTELKVECHKIRIHSTESQSKNCQYCGKNFPLSGSLTRHLREVHNIVDQNPNIKCRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00440587;
- 90% Identity
- iTF_00440587;
- 80% Identity
- iTF_00440587;