Dfer029397.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010003142.1:3757-5973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.81 50 5.5 2.8 1 23 137 159 137 159 0.97 2 17 0.01 0.61 11.5 1.6 2 23 167 189 166 189 0.96 3 17 0.00068 0.041 15.1 1.0 1 23 221 243 221 243 0.96 4 17 0.0086 0.53 11.7 0.5 3 23 262 282 261 282 0.98 5 17 0.0057 0.35 12.2 3.9 1 23 291 314 291 314 0.97 6 17 0.01 0.63 11.4 1.5 1 23 393 415 393 415 0.97 7 17 0.0011 0.066 14.5 1.8 2 23 423 445 422 445 0.96 8 17 0.00012 0.0072 17.5 0.7 1 23 454 477 454 477 0.96 9 17 0.00012 0.0075 17.5 3.4 1 23 480 502 480 502 0.96 10 17 2.4e-05 0.0015 19.7 1.8 1 23 507 530 507 530 0.98 11 17 0.0049 0.3 12.4 3.7 3 23 541 562 539 562 0.95 12 17 0.037 2.3 9.7 1.5 3 23 570 591 568 591 0.94 13 17 3.8e-05 0.0023 19.1 2.1 1 23 600 622 600 622 0.99 14 17 5.3e-06 0.00032 21.8 0.8 1 23 628 651 628 651 0.96 15 17 0.0094 0.58 11.5 1.5 1 23 656 678 656 678 0.84 16 17 4.3e-05 0.0027 18.9 0.4 1 23 685 707 685 707 0.96 17 17 0.0041 0.25 12.7 1.1 1 23 712 735 712 735 0.97
Sequence Information
- Coding Sequence
- ATGGAACAGAGTTTACCCGCACCCATTAACACGATAAAATGTGCCGAAATGCATATTAACATTGAAAATGGAAACTTTTCATTCTTCTGCTTTCATTGCATTGGAGCCATCGAAATCAGATCCTTTGTGGAGATTTGTTCACACATAGAAAATATACATTTTCCTAAACCTGACGATGACGATCCAGTGGAAATAAGTGATGACGAGATTGTTGATGACGCTAACTGTATAATAAAAGATGAGTTAATGCGGCAGGAGGACACCACGGAGTTTATTAATATGCAATACGATGCCGAAGAAATTAAACTGGAATATTTAATTGATGAACAACTAGCGAACAATTTTGAAACATCAGATATACAAGTGGATCTAGTTGAATCCAAAAATGTTGATTTAAAACCTGGAGCATTCACATGTAGCTTATGCAAAATACATTTTATAGGCAAGAATTTCTTTGATAGTCATGTTCAGTCGCATGAGAATAATACTATGCTATGGACATGTGAGTTTTGTCCAAAAAAGTATTCTATAAGAAACTCATTTATTTCACATAGACGCAAAAATCATAGAAACGAATATTCGATACTATATAAAAGTGCAGTTGACAAAGATGTAGAAGTGGCAGCCGCTTTAGACGTTTCCGATTCCGAAGAAACGACCTATTTATGTAAAATATGTGAATCGAAATTCACTAGTAGATCATCTTATCTCGCACATTTAAAAATACACAAATTAAATTATGCTGAAGATAATGATGATCATTTACAAGCTGATTGCGAATTGTGTACAATTTGTAAGATATATTTCATGTATAAAGACAATTATGAAAATCACCTTAAAGCTCACCAAGATCAGGAATCGACTATTATTTTTCATTGTGAGCAATGCGATAAACAATACACAAATCGAAATTCTTATTTGGAACACAGAAAAAGAGCACATGCATTGCAAGATGCGATACTACAACAAATGGTTGATATAAAGTTTAAAGGGTTTATTAAAAATAAAATTCTTAAAAAAGATACCACAGAAAGTGCAGTGGTTCTCAAGCCCTTATTACGCCCGTTTATAAATAAAGACGATACAAATATTTCTCATCAGGATGACGATGCTCAATCCAATGTAAATAAAATCGATTTTGTACCTTTGTTTTCTAAAAACAAAGAAATGGTTGTTTATGATTGTAGTAATTGTAATTTATTTTTCCAGGAAAAAACTTCTTATGAACAGCACATGAAAGCTCATGTTGAAACAGAAATGATTTGGCAATGCGAGGATTGTGATGAAATTTATCATAGAAGAGACCACTATTTGAAACATATACTTGTAAAACATAAAAATCTTGAAAATAGACAATGTTTTACATGTGACATGTGTAACAAGACATTTATGAAGAAGAGTCAAATTATCGCACATCTCAATAATGTACATGTTATCTTCGAATGCAAACAATGTAATATTGTATTTTCATCAAAATCAAAACTTAGACACCATAATGCCAGACATCGAACTACTAAATATGAATGTGAATTGTGCGATGAGAAATTTTGTAAAAGGTACCTCCTTCAGATACACATGAGTACTGTTCACCCAGAAGCGATAGAAAGCAAACGTATGCATTGCACAATATGCCGTAAAGATTTCAAAAACCTTAAATTACTAAAAGAACATTTATCACGTAGGCACGAAAATTCTATGTACGTTCACTGCTCTTTATGTCCGTCTAAATTTAAAGCGAAAGCAAATTTAAAGTATCATATTTTGAATAAACATACGGACGATTCAAACAAACTGAAATATACCTGCGACATTTGTCAAAATTCATATTCTCATCcaagttacctaaaaattcataaaaggatccatgctggagttaagccattcgtatgttcttattgtggcaaacaattCTACGGTTCTAGTTCTCTTACAACACACATTAAACAAATTCACTTAAAAGTACGTTACAATTGCAAATATTGCGGTAAAATCTTTAACAATAGTAATATACGTAATTTACATGAACGTCGGCATATGAATCCCCAATTACGATTTAGTTGTGAAACATGTGGCAAGACATTTGCAAGCCCAAAAGTGCTTCAAAATCATTTATATCTACACCAGGAAAAACGATTTAAATGTAAATTTTGCGATATGAAATTTGCACAGTCATCCGGACGTCGAGGACATGAACGGAGTGCTCACAAAGCAATTTAA
- Protein Sequence
- MEQSLPAPINTIKCAEMHINIENGNFSFFCFHCIGAIEIRSFVEICSHIENIHFPKPDDDDPVEISDDEIVDDANCIIKDELMRQEDTTEFINMQYDAEEIKLEYLIDEQLANNFETSDIQVDLVESKNVDLKPGAFTCSLCKIHFIGKNFFDSHVQSHENNTMLWTCEFCPKKYSIRNSFISHRRKNHRNEYSILYKSAVDKDVEVAAALDVSDSEETTYLCKICESKFTSRSSYLAHLKIHKLNYAEDNDDHLQADCELCTICKIYFMYKDNYENHLKAHQDQESTIIFHCEQCDKQYTNRNSYLEHRKRAHALQDAILQQMVDIKFKGFIKNKILKKDTTESAVVLKPLLRPFINKDDTNISHQDDDAQSNVNKIDFVPLFSKNKEMVVYDCSNCNLFFQEKTSYEQHMKAHVETEMIWQCEDCDEIYHRRDHYLKHILVKHKNLENRQCFTCDMCNKTFMKKSQIIAHLNNVHVIFECKQCNIVFSSKSKLRHHNARHRTTKYECELCDEKFCKRYLLQIHMSTVHPEAIESKRMHCTICRKDFKNLKLLKEHLSRRHENSMYVHCSLCPSKFKAKANLKYHILNKHTDDSNKLKYTCDICQNSYSHPSYLKIHKRIHAGVKPFVCSYCGKQFYGSSSLTTHIKQIHLKVRYNCKYCGKIFNNSNIRNLHERRHMNPQLRFSCETCGKTFASPKVLQNHLYLHQEKRFKCKFCDMKFAQSSGRRGHERSAHKAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -