Dfer033531.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010055891.1:1-2764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.55 34 6.0 4.9 1 23 20 43 20 43 0.96 2 19 0.016 0.99 10.8 1.7 1 23 105 128 105 128 0.98 3 19 0.00056 0.034 15.4 4.0 1 23 139 162 139 162 0.97 4 19 0.00095 0.058 14.7 1.5 2 23 239 261 238 261 0.96 5 19 0.0094 0.58 11.5 2.3 1 23 285 308 285 308 0.98 6 19 1.6e-05 0.00099 20.3 1.9 1 23 339 361 339 361 0.98 7 19 0.74 46 5.6 1.8 1 23 374 397 374 397 0.95 8 19 4.1e-05 0.0025 19.0 2.1 1 23 416 439 416 439 0.98 9 19 0.00039 0.024 15.9 2.1 1 23 478 501 478 501 0.98 10 19 0.0014 0.087 14.1 0.7 2 23 522 543 521 543 0.96 11 19 0.23 14 7.1 1.2 1 23 557 580 557 580 0.97 12 19 3.1e-05 0.0019 19.4 3.5 1 23 591 614 591 614 0.98 13 19 0.0022 0.13 13.5 2.3 1 23 634 657 634 658 0.97 14 19 1.1e-05 0.00066 20.8 0.3 1 21 677 697 677 698 0.97 15 19 0.00019 0.012 16.9 1.1 1 23 708 730 708 730 0.98 16 19 0.00033 0.02 16.1 0.1 3 23 738 758 736 758 0.96 17 19 0.00033 0.02 16.1 6.8 1 23 764 787 764 787 0.98 18 19 0.16 9.7 7.7 0.6 1 23 794 816 794 816 0.95 19 19 0.0044 0.27 12.6 6.8 1 23 822 844 822 844 0.96
Sequence Information
- Coding Sequence
- GCCCTTCAATCAAAATGCGCCGAAATATTTCGCAACACCGACACAGGCCAGTATGCATTCATTTGTTTTCATTGTGGCTCCTGCTTTGAACAATTTGACCAGATTCACGATCACATTGAGAAGGAACATAATAACCGATCATCCGAAGATATATTTGAAAACGTAGAATTTATTGAATTTGTTGAAGATGTTGAAAGTGCAGACGAAACTGAGACTGCTGCGGCTGATGAAGATTATAGTTTAGGATCTACAATGACCGAGTTCATTGAACAGAGTGATGCGCCAGAGCCCCGTCAGGCGCTCCAACGACCATATAAGTGTTCGCTTTGTAGTAATACGTACGAAATTAATAAATCACTGCAAGATCATTTGCGAAGAAAACACGGAATATATCAAAGTAGCTTCAGAAAACCGTACAAATGTGAACATTGTGTCCGGACATTTACGCTGAAAAAAGCGCTAATGAAGCATAAGCGTCAGGAGCATCCTGGCGGTAGTTCATTGGCTGCGGACATTAAAACTGAATTGACGAGCAGTAATTTTGGCAGTGAAGCGAATTTGAGTTTTACAGACGAAATAAACCATACAAATTTTCATCTTGAAAAATTGCAGGACATCGGCGAAGAGATATCAATAAAAAATGAGCAATTACAAGATAGTCACGGGGACGATTTTGGTAACTACAGTGGCGGCTCAAACGAAACACAAGAATTGAAATGTAAAATTTGTCAAAATTCGTATAAAACGCTAAGGTATTTGAAAGAACATCTTCGAAATGTACATTATGTTTTTTTGCCGAAAAAGCAAATAATCGGAAAAGAACCTATAAATCCATCAATGCATAATGAAACGTACAGGTGTAACATTTGCGATAATCAATACTACCTTAAACGTTCCTTTGCCGACCACATGCGAAAGAAACATTCAATCTTTAAGTCTGGCAGACAGAATTTAACTGCTGCTGCTGCTGCAGTTGATGGAGACACACCAATGAATGAAATACCACTTGCCGAATACACCTGCGACTATTGTAATAAGTCGTTTACCAGCAAGAACAACATTCTAATTCACTTCAGGGTGCACATCGCACAAGATGACGCTGCAGCAAAGGCCGATTCTTTTTTATGTGAAATTTGTAAACGATGGTACAATTCGATAAGGGCCTTACACGATCATCAACGAAAACAACATGCCATCTATCACAAGAAGAAACATGCGATTCATACAGACCAGTCAGTGGAAGATTTCAAATGTGATCGTTGCGACCAGAACTACACTAGCCTGGAATCATTGAACCAGCACATGCGTAGAAAACATGGAATTTATCAAAAGGCAGCTGTGAAAGAACCCGAAAGATACGATCAATTGCATATGGAACCATATTTTATAGAAGAGAATTCTACAATTGTTTCCGACACTCTCAGCAAAACTTTCCAATGTACTTTTTGCAATCGAACCTATGCGATGGAAAATTCCCTCAACACTCATATTCGACGATTCCATGGTGCCTTTCAGGAGACATTGTTTGGCCTCTCAGAACCCAATAACGTTCCAAATGAACTGCAATGCGAAGTGTGTAAGCAGATATTTGACACACAAGTGCTATTAAATGAGCATTTGCACAGTCACGTTAGCGCAGACGATGCTGTTACTGCACCAGAAACAAAGTACGAATGTAAACCATGTAATGTAACGTATGCATTGAGGAAGTCCTACACGGACCATCTGCGTAAGAAACATGCAATTCGTAATAAACAGTCGGTGGAAGTATTCAAATGTGATCATTGCGACAAAAGCTACACTATCCGTGATTCATTGTACGAGCATATGCGAAGTAAACATGGAATTTATCAAAAGGCAGCTGTGAATAAATCCGAGAAGCCTATAACGGACACATCGTTTTCGTGTACGATTTGCGAACGAAGCTTCAATGAGCGAAAAGCAATGGTGGATCATTTACGCCGTCGACACCACGTTTATCATAATAAAAATGCAAAATCCAAAGACGAACAATGGCTCCCGATGGTTTTTAAATGTGAAATTTGCAGCAAACCGTTTGCTAATCAGCGTTCGCTTATGAAGCATTTGCGTTTATTCTGTTCAAACGCAGACAGAGAACCATTCAAATGTTCTCAATGCGATGCGTCGTTTCCGCTGCAAAGCCGTTTAAACACACACATGACGCGACACTCCCTCCTTAAACCGTTCGGATGTGAGGTGTGCGGCATAAGCTACAAAGACAACGGCTCCTTGCAACAACACCGCCTCTTGCACAGTGACAAAAAGCAATACCAATGCCACATTTGTGGGATGCAATTTTACTCAAGCAATCATATGCACACTCACATTCGGACAATGCATCAGAAGGGCGAAAAGCGATTCGAATGCGGGACATGCGAAATGAAATTCTACTCGGCCTACAGCAGGAAAATTCACGAACTTCTTCACACTGGCCTGCGACCACATGCATGTACTATGTGCGACAAAAAGTTCACTAGGAGGCATGTATTGCACACACATCAACTGATACATTCGGAGAAACGCTTTGAGTGCCGCTGTTGCGCGAAAGTAGTACCGCATGATATGCGATTAACTGCAGTTGGTTTATTTTCGAATTTCTATATGCATGACGTCATATCGCCACATCCACTTGTTAGATAA
- Protein Sequence
- ALQSKCAEIFRNTDTGQYAFICFHCGSCFEQFDQIHDHIEKEHNNRSSEDIFENVEFIEFVEDVESADETETAAADEDYSLGSTMTEFIEQSDAPEPRQALQRPYKCSLCSNTYEINKSLQDHLRRKHGIYQSSFRKPYKCEHCVRTFTLKKALMKHKRQEHPGGSSLAADIKTELTSSNFGSEANLSFTDEINHTNFHLEKLQDIGEEISIKNEQLQDSHGDDFGNYSGGSNETQELKCKICQNSYKTLRYLKEHLRNVHYVFLPKKQIIGKEPINPSMHNETYRCNICDNQYYLKRSFADHMRKKHSIFKSGRQNLTAAAAAVDGDTPMNEIPLAEYTCDYCNKSFTSKNNILIHFRVHIAQDDAAAKADSFLCEICKRWYNSIRALHDHQRKQHAIYHKKKHAIHTDQSVEDFKCDRCDQNYTSLESLNQHMRRKHGIYQKAAVKEPERYDQLHMEPYFIEENSTIVSDTLSKTFQCTFCNRTYAMENSLNTHIRRFHGAFQETLFGLSEPNNVPNELQCEVCKQIFDTQVLLNEHLHSHVSADDAVTAPETKYECKPCNVTYALRKSYTDHLRKKHAIRNKQSVEVFKCDHCDKSYTIRDSLYEHMRSKHGIYQKAAVNKSEKPITDTSFSCTICERSFNERKAMVDHLRRRHHVYHNKNAKSKDEQWLPMVFKCEICSKPFANQRSLMKHLRLFCSNADREPFKCSQCDASFPLQSRLNTHMTRHSLLKPFGCEVCGISYKDNGSLQQHRLLHSDKKQYQCHICGMQFYSSNHMHTHIRTMHQKGEKRFECGTCEMKFYSAYSRKIHELLHTGLRPHACTMCDKKFTRRHVLHTHQLIHSEKRFECRCCAKVVPHDMRLTAVGLFSNFYMHDVISPHPLVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -