Basic Information

Insect: Diadocidia ferruginosa
Gene Symbol: -
Assembly: GCA_027564275.1
Location: JANSTW010061604.1:884-3025[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0028 0.17 13.2 0.4 1 23 215 237 215 237 0.95

2 13 5.3e-05 0.0033 18.6 0.1 1 19 290 308 290 312 0.96

3 13 6.1e-05 0.0038 18.4 0.9 1 23 319 341 319 341 0.98

4 13 0.00022 0.013 16.7 0.6 1 23 354 376 354 376 0.99

5 13 2.9e-05 0.0018 19.5 5.6 1 23 385 407 385 407 0.99

6 13 0.00029 0.018 16.3 0.4 1 23 413 435 413 435 0.97

7 13 1.7e-05 0.001 20.2 5.1 1 23 441 463 441 463 0.99

8 13 8.6e-06 0.00053 21.1 1.0 1 23 469 491 469 491 0.95

9 13 0.057 3.5 9.1 1.2 1 23 497 519 497 519 0.97

10 13 0.00014 0.0086 17.3 0.6 1 23 525 547 525 547 0.96

11 13 4.9e-06 0.0003 21.9 0.6 1 23 553 575 553 575 0.98

12 13 3e-06 0.00018 22.6 0.8 1 23 581 603 581 603 0.99

13 13 0.0039 0.24 12.7 0.7 1 23 609 631 609 631 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0028	0.17	13.2	0.4	1	23	215	237	215	237	0.95
2	13	5.3e-05	0.0033	18.6	0.1	1	19	290	308	290	312	0.96
3	13	6.1e-05	0.0038	18.4	0.9	1	23	319	341	319	341	0.98
4	13	0.00022	0.013	16.7	0.6	1	23	354	376	354	376	0.99
5	13	2.9e-05	0.0018	19.5	5.6	1	23	385	407	385	407	0.99
6	13	0.00029	0.018	16.3	0.4	1	23	413	435	413	435	0.97
7	13	1.7e-05	0.001	20.2	5.1	1	23	441	463	441	463	0.99
8	13	8.6e-06	0.00053	21.1	1.0	1	23	469	491	469	491	0.95
9	13	0.057	3.5	9.1	1.2	1	23	497	519	497	519	0.97
10	13	0.00014	0.0086	17.3	0.6	1	23	525	547	525	547	0.96
11	13	4.9e-06	0.0003	21.9	0.6	1	23	553	575	553	575	0.98
12	13	3e-06	0.00018	22.6	0.8	1	23	581	603	581	603	0.99
13	13	0.0039	0.24	12.7	0.7	1	23	609	631	609	631	0.95

Sequence Information

Coding Sequence: ATGGATCTGAAAGAATTCAATCGGTTTGATGGCGCTTGCCGGGTGTGTTTGCTGAAAGATTCCCTCGAAAATGAGATGTCCAACATATTTGAAGTGTTAATACAGGAATTAAACATCTCTCTTTGCAATTTGTTTACATCATTTACCTCACTACAATTGATGGATCAGTCTGTGCAGGGATTTCCGACACAGATTTGTACAAATTGCCTAAATTGTCTGGTGACAGCCTACGAATTTCAATTAAAATGCATCAAAAGCGACCACGACATTCGCATTGCTTTGGGATATTTGCCGCAGAAGTCGCCAATCAAAGATACATTTGAGATGAAAAGTATTCAAAAGCAAGATCCTATTAAATGCGAACCGATTGATGAGACCATTAAACATGAATCCTATTTTGCGGCAGTTGGTTCCGTTGAAGTGGCGGAATATGGAAATAACTTTTCTTTGGATGATCGGGATTATGAGGACGACTACGAAGATGATGATGATTCAGACTATAAAGCATCTGTAAGAAAACCAAAAATACAAAAAAAGCCTAGAAAATCAAATAACAAACTACACAATAgtgatatttatgataaatcatttgacaaaacttctcgtcgacattctaaaatacaccgttcagagagtaaaccatttgaatgtataatttgtaaaagacgttttacggacgaaTCTCGTCTAATTTCTCATCAAGAAATCCATTCTAAAGAATTTAAGAAAAAACGAAATGATTATTCAAATGAGCATCAAAATCAAAAAATACCTTTAGATGCCGAGCTGCCCTCCGACAATGGTAAATCCGTTTCAGACTATAAAGCACTTGTTAAGGCGGATAAAACCAAAAAGGTGAAAAAAATATATACTTGTCCTATATGTAATAGGGTATTTGATAGACCTTCTCGTTTACTACGACACTCCCCCATTCATAATCCCGAGGGTAAACCATTCGAATGTGATATTTGCAAAAAACGATTTACGATTGAAAGTAAAATGATTCGTCATCAAATTACACATTCCGAAGATTTGCTGAAGGAACCAAAACCAAAATTATACCAATGCCGCGAATGCCCACGGGAATTTTGGAAACAAGAATCGCTGACGTCACACATGAAAGTACATAAAGATTATATGGGCGAGGAGGAATATACTTGTGAATATTGCCCAAGAAAGTTTACGCAATTGCATAAATTAAAGCAGCACACGAAAACCCACGATGAATGTAAAATACATCGTTGTTCTATTTGCGGTAAAACTTTTGCCGCTGGAACACAGTTAATTGACCACCTGAACAATCACAAAGGCATTAAACCCTATGTTTGTCATATTTGCGATAAAGgatttcgacaatactgcacacttcagaatcatttacaaacgcacagtggcgaaacgccatttttgtgttctgaatgtggaaaatcctttaataatggcaacagtttaaaatcgcacatgctgcgacacaccggagttaaaccttttgcttgcgaactatgtCCGATTCGATGTTATACTAAAGGCAGTTTAAACTTTCACATGTTATCCCATACGGGTATTAAACAACATGCTTGTGACATATGTGGTTCAACTTTTACCAGTGTCGCTTTACTATCGAAAcatcgacgaattcataccggcgagcgaccttatccttgtgaaatgtgtgataagAGatttactgcatctgatagtgctaagaggcacatgcgatcgcatactggtgaaaaaccatacaaatgtgaattttgtgatcgagcatttgcccaaagtaatgatctagtaaagcacacaagatctcatatcggcgataacacgtatcgatgcaaagaatgtccggctgcatttagattgtatagtgaatttagatcgcataatacaatccattatgccgaacaacAGCAATTAAAAGCTACAACCAATGAACTGCAACCGACACCACCAATACAAACTGCTGGCAGATAA
Protein Sequence: MDLKEFNRFDGACRVCLLKDSLENEMSNIFEVLIQELNISLCNLFTSFTSLQLMDQSVQGFPTQICTNCLNCLVTAYEFQLKCIKSDHDIRIALGYLPQKSPIKDTFEMKSIQKQDPIKCEPIDETIKHESYFAAVGSVEVAEYGNNFSLDDRDYEDDYEDDDDSDYKASVRKPKIQKKPRKSNNKLHNSDIYDKSFDKTSRRHSKIHRSESKPFECIICKRRFTDESRLISHQEIHSKEFKKKRNDYSNEHQNQKIPLDAELPSDNGKSVSDYKALVKADKTKKVKKIYTCPICNRVFDRPSRLLRHSPIHNPEGKPFECDICKKRFTIESKMIRHQITHSEDLLKEPKPKLYQCRECPREFWKQESLTSHMKVHKDYMGEEEYTCEYCPRKFTQLHKLKQHTKTHDECKIHRCSICGKTFAAGTQLIDHLNNHKGIKPYVCHICDKGFRQYCTLQNHLQTHSGETPFLCSECGKSFNNGNSLKSHMLRHTGVKPFACELCPIRCYTKGSLNFHMLSHTGIKQHACDICGSTFTSVALLSKHRRIHTGERPYPCEMCDKRFTASDSAKRHMRSHTGEKPYKCEFCDRAFAQSNDLVKHTRSHIGDNTYRCKECPAAFRLYSEFRSHNTIHYAEQQQLKATTNELQPTPPIQTAGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -