Dfer021128.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010127664.1:5293-7952[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.012 0.75 11.2 0.4 1 23 90 112 90 112 0.98
2 17 0.17 11 7.6 1.8 1 19 150 168 150 172 0.89
3 17 0.0022 0.14 13.5 0.1 1 23 178 200 178 200 0.98
4 17 3.1e-06 0.00019 22.5 1.5 1 23 206 228 206 228 0.99
5 17 0.00011 0.0066 17.7 0.4 1 23 234 257 234 257 0.97
6 17 4.9 3e+02 3.0 2.1 1 23 337 360 337 360 0.90
7 17 0.0056 0.34 12.3 0.2 3 23 405 426 403 426 0.90
8 17 0.0027 0.17 13.2 0.8 1 23 432 454 432 454 0.97
9 17 0.13 8.2 7.9 7.1 1 23 460 482 460 482 0.98
10 17 5.4e-05 0.0033 18.6 0.3 3 23 490 510 489 510 0.98
11 17 0.00093 0.057 14.7 5.5 1 23 516 538 516 538 0.98
12 17 0.0082 0.5 11.7 5.2 1 23 544 566 544 566 0.93
13 17 5.8e-07 3.6e-05 24.8 2.5 1 23 572 594 572 594 0.99
14 17 7e-05 0.0043 18.2 2.1 1 23 600 622 600 622 0.99
15 17 1.6e-07 1e-05 26.5 3.6 1 23 628 650 628 650 0.99
16 17 1e-05 0.00061 20.9 4.3 1 23 656 678 656 678 0.98
17 17 4.6e-08 2.8e-06 28.3 2.4 1 23 684 706 684 706 0.99

Sequence Information

Coding Sequence
ATGGATTTAGAATTTGTAAAAGTAGACGATTGTTCAGAAGTGCCAGCACCACCATCAGTAAATAAATTTAAAAAATATCAACACAAAAGAACTATTAAGAAAACAGTTGTGGATGATGATAAATTCAACGATTCAAATTTCCTACAAAGTGCAGCAACCAGGAAAAGAAGTAACATTAAGTCTGAGATCATCTCATCCACCAAATTGATAGTTAAAAAAAATAAAATAGTTCCACCAACAACTGATCGAGTTGACGAACGATCATTATTTCGATGTAATTTATGCAATATTACCTATAACAAGATAAGTATTTTAGAAGTTCACGTTCGCACTCATTTTGACGATAAACCATATAAATGTTCTTTGTGTGATGATGATTTTTGGGCAGCAGACTCTTTAATCAGCCATTGTAGGGAATTGCATCAAGATGCAAAAGATAAACTTTTGTTTAACTGTCGCTTTTGCGATAAGAAATTTGAACAGGAGATTGattttcgagagcacgatacgacccatacaaatgagaagccatatgattgctcggagtgtggtgaagatttctggtcattgtcggcattaaattcacataaacgtatacattttggtgataaaccttataaatgtaacgaatgtgatcgacgatacacaagatccgaagatttaaaTACTCATTCTCGCATACACAAAGGTCTGGCTGTATTTGAATGCACATTATGTGACCGAATGTTTGCTCAATCGAAAACCCTTGGCTCGCACGTGCGAAAAGCGCATCGAAACAATTTCAAATCTGATGAGTTATCTCTAATTGATTTTGTCGTTGATGGTGAGGTAAACGAACGGATACAAAATATTTCAGAGCAACCGAGACCGGACGTTTCAGGTGAACGATTTAAATTGGATGTTGTTTCAATTGTAAGAAATATTAACAGTGAAGACTGCATAGCTACAGCACAGATGATCACCAACAGTAGTTCAAATGTAGAGGTCAAAACTGAACTGATTCGTAAATATAAGTGTCCTTTTTGTGTGCTGTTATTTGTAAAAATTAAAAGCTTAGAAATCCATTGTAAACGTAATCATGAGAAAATATATAAATTGGAAGAATTGCGACAAATCGAAAGAGACGTAGCAGACGCTGTTATAAAATCCGAATTATCGAATGAAAGACCAGAGCTGACTAAAATTGCAAATGTAATACCGAAAAATCAGAACTGTCCAAGTTGTAATTTAGTTTTTCCCTCACGTTCGCTTTTAATTTCACATTTATACGATCAGCATGATGCTTCGAAACCATATAAATGTGCCGAATGTTCTATGAATTTTTCGAAATCGAAAACATTAAGCGATCATGTTACAATTCACTTAGATGCCAGTAGACATAAATGCCAATATTGTGGATTGTCTTTTCTACAAATGCATTCCATGCAAAAACATCGAAAGCGTCATGAAGGACCCAATCTACGAAATTGTACAGTTTGCAACATACCGTATGCAAATCAAAAAGAtttggatcgacatatgcgaacacatgccgaaggtaaaccgcacaaatgtgattattgtgaaaaacgatttgctcaatcctgcgataaggtaaaacacatgagaatacatacaggtgaacgaccatattgttgtaaggtgtgtggaaaaacctttgcacatttgaccagcataaaaaagcataatttcgtgcatactggcgaacgaccatttcagtgtacaatttgtggaaaatcatttcaacacaatagcaacttagtggtacacaatcgaacgcataccggtgagcggccctatcaatgtcagatttgtaaaaagacattttacgcttcgggtcattatgcggatcacatgaaaattcataatggcaaaaaagactacgagtgcgacatttgcggcaaaagtttcattcaccaaagtagttttcaaaaacacaaacgaacgcataccggcgaaaaaccataccattgtacactatgtgatcgtcgtttctctcaaccgggccactatcgcgaacacatgcgcattcatacgggcgagaaaccgtacaaatgtaaaatttgtaaaaaatcttttcgtcgctctgatgccctacaaagtcacattaaaactcatcctatcgaCCCAAAATTAAACGAACAATTAAATGAATTTATATTGGACCGGGATAATGATAAAAACAAAATACTTGAACAGCCCACCAGCTCATTCGTCAAATATCAATTATCTTATGAAATTCCTTCAATACTAAAATCAAATCCATTTGCTAATAATGAATTCGTCCTACCAACGACTTGCTCACATCCAAATATTATCGTTCATCATGATGCAACCGACAAGCTATCCGATAATTTTGTCCTATTGAAAAATCCTTCAGTTGATTCTGCGAAATCAGTTTCATCAAATCAAGCACATTATTTAAGTCATGTCATCAATTTAAACGGTTCCGCCGAACAAGTACTAAATCTGCCTGAATCAACCCAACTACCGTCAATTTTGAAAGCGGCTCATCATTCTACCGATGAAATGCTTACGACGACGACGACCACTGCTGACGATACTACCTTCAATACGTTTAGCTATAATTTTAGTTTATAA
Protein Sequence
MDLEFVKVDDCSEVPAPPSVNKFKKYQHKRTIKKTVVDDDKFNDSNFLQSAATRKRSNIKSEIISSTKLIVKKNKIVPPTTDRVDERSLFRCNLCNITYNKISILEVHVRTHFDDKPYKCSLCDDDFWAADSLISHCRELHQDAKDKLLFNCRFCDKKFEQEIDFREHDTTHTNEKPYDCSECGEDFWSLSALNSHKRIHFGDKPYKCNECDRRYTRSEDLNTHSRIHKGLAVFECTLCDRMFAQSKTLGSHVRKAHRNNFKSDELSLIDFVVDGEVNERIQNISEQPRPDVSGERFKLDVVSIVRNINSEDCIATAQMITNSSSNVEVKTELIRKYKCPFCVLLFVKIKSLEIHCKRNHEKIYKLEELRQIERDVADAVIKSELSNERPELTKIANVIPKNQNCPSCNLVFPSRSLLISHLYDQHDASKPYKCAECSMNFSKSKTLSDHVTIHLDASRHKCQYCGLSFLQMHSMQKHRKRHEGPNLRNCTVCNIPYANQKDLDRHMRTHAEGKPHKCDYCEKRFAQSCDKVKHMRIHTGERPYCCKVCGKTFAHLTSIKKHNFVHTGERPFQCTICGKSFQHNSNLVVHNRTHTGERPYQCQICKKTFYASGHYADHMKIHNGKKDYECDICGKSFIHQSSFQKHKRTHTGEKPYHCTLCDRRFSQPGHYREHMRIHTGEKPYKCKICKKSFRRSDALQSHIKTHPIDPKLNEQLNEFILDRDNDKNKILEQPTSSFVKYQLSYEIPSILKSNPFANNEFVLPTTCSHPNIIVHHDATDKLSDNFVLLKNPSVDSAKSVSSNQAHYLSHVINLNGSAEQVLNLPESTQLPSILKAAHHSTDEMLTTTTTTADDTTFNTFSYNFSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-