Dfer002262.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010054111.1:6629-10888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.18 11 7.5 0.1 1 22 192 213 192 214 0.91 2 14 0.00047 0.029 15.6 3.9 1 23 217 240 217 240 0.97 3 14 0.00045 0.028 15.7 6.9 2 23 253 275 252 275 0.96 4 14 0.56 34 6.0 0.6 2 19 324 341 323 341 0.93 5 14 3.6e-06 0.00022 22.3 2.0 2 23 529 550 528 550 0.98 6 14 2.5e-05 0.0016 19.6 5.0 1 23 556 578 556 578 0.95 7 14 7.3e-05 0.0045 18.2 4.5 1 23 584 607 584 607 0.94 8 14 5.1e-07 3.1e-05 25.0 0.7 3 23 619 639 618 639 0.98 9 14 0.00059 0.036 15.3 0.3 1 23 644 666 644 666 0.98 10 14 6e-06 0.00037 21.6 0.4 1 23 672 694 672 694 0.96 11 14 4.6e-06 0.00028 22.0 0.6 1 23 700 722 700 722 0.98 12 14 1.5e-05 0.00091 20.4 0.7 3 23 730 750 728 750 0.96 13 14 2.5e-06 0.00016 22.8 0.8 1 23 756 778 756 778 0.99 14 14 0.0016 0.096 14.0 0.9 1 23 783 806 783 806 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGAAAACGGTGTGTCGAACATGTCTGCAAGAAAATCTAGAAATGAAATCAATATTCTGTGAAGACTTTATGCAGCAGCAGCAGCCGCAGTCTTCGTTGTCATTGTCAAGTATGATAGCAGCTTGTACAGTCACCACGGTATCCGAACTGGATGGATTGCCAAGTCAAATTTGCCTACAATGTGCTGACCGCATAAAAATGTCATTCCAATTTAAACAACAGTGTGAATCCTCATATGAAACTCTTAAGAAAGTGTTGGGCATACATATTGAGCCGAAACATACAGCTTCTCCACAGAATCTGGAAAGCTCAAACAATGTAACCGATGCCTCGAAAGTGGCTACTGAAATTATCGGATCAAATAACAAGTTGGATTTATTTCCATTGATTGCAGACGATGATGACGATGATTATTTTAACGATAATTTTGCCGACAAATTTGACGAACACTTTAGGCGAGAAGATGCCAGATGTAAACCTACAGTGATGACCTTTCCGAAAATAAGTTTTACCGACGAGGACTTGGCACCGAATGAAAAATGCATACAGACAGACGAAATTTGTTTTTATCCGTGTGAAATGTGCGAACAGAAGTTCCTCAATGAAGATGCTTTGAAGGTACATCGGCCAACGCACAAAGAGTTCAAATGTCGTTTGTGTCGTAAAATCTATACACGTTTAAATCATCTACGACGTCACATTAGCGTTACGCACCCTGATTTTATTATTTCTCGAGCGCTCGACGAGATTGTATGTCACGTGTGTAACAGGCAATTTACAAGAACTCATCATTTGCGTAACCATATGGAAAAACAGCATAATATCAAGAGCGATAATGATGCAGTCGTCGTTTCAAATGACAGTGATTCTGACGATCAATGCGATGACAAAGAGAACGTGAGCACCATAGCAACAAGGTCCATTAAGTCGCTCAAGCACGAACAACAAGACGATGAATGTATAAAGTGCAATGTTTGCCATCAATTGTTTAAGAACGAGGAAGAGTTTAACGGACACGATGGATGTATACCAAATAATTTCATGTGTTTTGCCGACAACTTTAAAACCAACGAGGACAAAGACAATATCCCTAAAGCAGAGTGTGCCGATGATGTGGATGTGGATGCTGGTAGCGCCGGCGATTCATTAAACATCGAACGTGTTAAATCGGAGAAAGTATCGgaccacgaaagtctttatgacgttggcggtaacgacgatgatgatgacgaggattatgttgaggagaaaaAACCGTTGCTTAAGAAAAAAACCTATAAAACGGCCGATGATAACGTAATCAGCTCGTCTGATGATGATGAAGAAGATGAAGACTTTAAGCCAACATCATCGTTGAAAAAGAAACGTAAACCAATCAAGAGTAAAAAACCCAAAGTTACTTCGAAGAAACGAAAGAGAAAAACTGTCAATAAGTTGCCAGTGGTTTGTAAATCGGAAATTATTGTTGATGGGGAAAATGCTGGTAGTGAAGCAACACCTATACCGGATGCACCTATTGCGGAACCCAAGCCAAAACGTATGCGAAAACGAAGAAATAGCAAAGACGGCGTGGACAATAAATGTGAAATTTGTAACAAAGTATTTACGCGATATGCACACATGGTACGCCACATGCTGACACATTCGGAAGTTaaaccgtacagctgtgacaaatgtgacaagtcatttagccgactcgatcatttaaaaaatcataaattcaatcatgacgaagttaagccacactattgtgaattatgcaaaaaaggatttactcgcgccgagcatttGCGCAAGCATATGGACAACCGGCACAGCGGTAAACCGCCAGCTGAAAAGACAGAAATTTGTAACCTTTGCAATAAAGCGTTTACCACCCCGAAATATTTACAAATTCACATGCGAACACATTCGGATCGATCGTTTGAGTGTAAGGTGTGTGAGGAGAAGGTTGGCTCCAAGTCAGAATTGAATGAGCACCTGAAAAAACATGTACATGAACGTCCATTCCTCTGTTCAGAATGTGGTCTACGATTTGTACGTAACGACTatttggtcattcacatgcgtcgacataagggagagaaaccgtacaaatgtaaattttgtggtaaaggttttccaagagccaccgatcttaacgttcacgaacgctatcacaccggcgaaaaaactcacttatgtacaatatgtggcaaaggatttcaacgagcctacaatttggtggtacacactagagtgcataccggtgaacgtccctaccaatgcccacattgcgttaagagttttgctcaaggcaacgacctgaaagcacacatccgacgacacaccggtgaacgttataagtgtgatatttgtggcgatggattcattcagggctatcatttgactcagcataaacgaaacatTCATGGCATTGACATGCAATCGCATATAAGACGAGTGGAGAAATTTTTGCCGCCTCCAGCACCGGAAACAATAATTGAAGATCAACAAAATGATGATCTAAATCCATTGAATCAAATACAGCAGCTCCAAAAAATGCACCAACAACAAATGCACTTTCTTGCTGCGGCTGCCAATGCTGCCAACAGTGATCGGACAGCAATTATTGACGTAGACAATTCATCGTCGCAGCATTCATTTCATTCTGAGATAAAAACGGAGCCAAATTCAAGTACTTTTAGCAATGAGGAAATTATGCATCATCATCATCATGACTCGCAGTCATCGGATATCATATTTATAAATCATCCGAACGAGCATCTGCAACAACTGAAACCACCACCACCAATACCATCAGTAAATCATCATTTATAA
- Protein Sequence
- MDVKTVCRTCLQENLEMKSIFCEDFMQQQQPQSSLSLSSMIAACTVTTVSELDGLPSQICLQCADRIKMSFQFKQQCESSYETLKKVLGIHIEPKHTASPQNLESSNNVTDASKVATEIIGSNNKLDLFPLIADDDDDDYFNDNFADKFDEHFRREDARCKPTVMTFPKISFTDEDLAPNEKCIQTDEICFYPCEMCEQKFLNEDALKVHRPTHKEFKCRLCRKIYTRLNHLRRHISVTHPDFIISRALDEIVCHVCNRQFTRTHHLRNHMEKQHNIKSDNDAVVVSNDSDSDDQCDDKENVSTIATRSIKSLKHEQQDDECIKCNVCHQLFKNEEEFNGHDGCIPNNFMCFADNFKTNEDKDNIPKAECADDVDVDAGSAGDSLNIERVKSEKVSDHESLYDVGGNDDDDDEDYVEEKKPLLKKKTYKTADDNVISSSDDDEEDEDFKPTSSLKKKRKPIKSKKPKVTSKKRKRKTVNKLPVVCKSEIIVDGENAGSEATPIPDAPIAEPKPKRMRKRRNSKDGVDNKCEICNKVFTRYAHMVRHMLTHSEVKPYSCDKCDKSFSRLDHLKNHKFNHDEVKPHYCELCKKGFTRAEHLRKHMDNRHSGKPPAEKTEICNLCNKAFTTPKYLQIHMRTHSDRSFECKVCEEKVGSKSELNEHLKKHVHERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLNVHERYHTGEKTHLCTICGKGFQRAYNLVVHTRVHTGERPYQCPHCVKSFAQGNDLKAHIRRHTGERYKCDICGDGFIQGYHLTQHKRNIHGIDMQSHIRRVEKFLPPPAPETIIEDQQNDDLNPLNQIQQLQKMHQQQMHFLAAAANAANSDRTAIIDVDNSSSQHSFHSEIKTEPNSSTFSNEEIMHHHHHDSQSSDIIFINHPNEHLQQLKPPPPIPSVNHHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -