Dfer028496.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- PRDM5
- Assembly
- GCA_027564275.1
- Location
- JANSTW010071451.1:775-2901[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.62 38 5.8 0.1 1 23 37 60 37 60 0.91 2 19 0.0026 0.16 13.3 4.7 1 23 158 181 158 181 0.98 3 19 0.0027 0.17 13.2 0.9 1 23 194 217 194 217 0.94 4 19 0.0001 0.0064 17.7 1.6 3 23 226 247 225 248 0.95 5 19 2.5e-06 0.00016 22.8 0.3 1 23 256 278 256 278 0.99 6 19 0.016 0.99 10.8 4.2 1 23 285 307 285 307 0.98 7 19 1.6 1e+02 4.5 0.3 5 23 322 341 321 341 0.94 8 19 0.00011 0.0067 17.6 0.3 3 23 350 371 349 371 0.95 9 19 8.1e-05 0.005 18.0 1.5 1 23 379 401 379 401 0.98 10 19 0.00011 0.0071 17.6 2.7 1 23 408 431 408 431 0.98 11 19 0.00095 0.058 14.7 0.3 1 23 444 467 444 467 0.97 12 19 0.0054 0.33 12.3 0.6 2 23 477 498 476 498 0.96 13 19 9.3e-05 0.0057 17.9 0.8 1 23 504 526 504 526 0.99 14 19 1.9e-05 0.0012 20.0 3.4 1 23 532 554 532 554 0.98 15 19 0.00029 0.018 16.3 1.4 1 23 560 582 560 582 0.98 16 19 0.00034 0.021 16.1 0.4 1 23 588 611 588 611 0.95 17 19 0.006 0.37 12.2 4.5 1 23 616 638 616 638 0.97 18 19 1.9e-05 0.0012 20.0 4.0 1 23 644 666 644 666 0.97 19 19 0.0012 0.073 14.4 0.7 1 23 672 695 672 695 0.93
Sequence Information
- Coding Sequence
- ATGGAGCAAACCTATTTGGAAAACATCAAAATTGAGCCCTCGCTGGCTGAACCACAATTAATAAAATGCAGTGAAGTATTTCGCAACAATTCGTCCGGAAAATATTGCTATATTTGTTATCATTGTGGCAATGAGTACGATTCGGACGAACAAGTTATCGCTCATCTTGAAGCTGAACATATCCTAATCACCGAAGATGATGTTGACGTTAAATTTGAAGAATTAACAAATTTCGAAGAAGTTGTAAATAATGATCTGAAACTACAAATAAACCAAGAGACTTCATTTCAAAATTATGAAAGTTCAATAAACTTTCATGAAGAGTTGAGTAGCAATAGTGACAAGAATTCTTTCAACATATTCTCAAATGATGATCAATACGTCGAAACAGGTATGCCTATTGAATCCATACCGACCAAAACAAATACTAAATCAAATCACATGATTGTGCAGTGGGATAGTGAAGAAGTCTTTACCTGTAATTGGTGCGATAAAACTTTTCACAAGAAAAAAACATGGATTGACCACAAAAGAAGGTCACATAATGTGGAATGGAGAAAAGCAAACAATTATGATTCTTTTTTGTGTGATATTTGTCCCAGTAGTTTCACTACCGAATCTAAAGTAAAGAATCATAAGAAAAGAATACATTCAACAGAATCGCAGTCAAACAATTGTCAATACTGTGGTAAATATTTTTCATTGCGTGGTTCACTTACCAGACATGTAAGAGAAGTTCATCATATTGCCGGAGTTACTAAAGAATATCGCTGTGATTATTGCGACAAAGTATTTAGGAACAAACCTTTAATTGAAATTCATATGAATATTCACAAGGATGAAGCGACAGTTTTTACTTGTAATTGGTGCAATAAAAAAGTTCATAAACGAAAATTGCGGGACCATATAAGAAGGTCACATTACGAGGAATGGAAGAATAAATATGGTTCTTTTTCCTCTGATAAGTGTCCCAGTAGTTTTACAACCAAAATTAAAGTAGAGGATCACAAGAAAAAACTGCATTTAACAGAATCGCAGTCAAAAAATTGTCAATACTGTGGTAAATATTTTCCATTACGTAGTTCACTTGCCAGACATGTAAGAGAAGTTCATATTGCCGGAGTTTCTAAAGAATATCACTGTGATTATTGTAAGGAAGTATTTAGGAACAAAACTTTAATTGAAATTCACATGAATATTCACAAGGATGAGGCGACAGTTTTTACTTGTACTTGGTGCAATAAAAAAGTTTATAAGAAAAAAAACTTGACGGATCACATAAGAAGGTCACATTATGAGGAATGGAGAATTACAAATAATTACGGTTTTTTTTCGTGTGATATTTGTTCCAGTAATTTTGCATCCATGAATGGATTAGAGCGGCACATGAAAAGAATTCATTTATCACTTATAGTAAAAGAAGAACTTATCTGTACAATATGCAATGAACAATTCGAGAACGCACAAAAATATAGGGAGCATAAAAGGCTGCACTCTAAGTTaaagacatttaagtgtaatatttgcgacaaggttgtccatacagcagcttatttagcggttcataaaagacgacacaatgccgatcgaatccacaagtgcacactttgttcaaaagcctttgttgaccagatgtatttaacaaagcacttgaaaacacacactaaaaataaaacttacgattgcgatttatgcgataaaaaatacactttagcatttacattgaaaatacacaaaagaactcataccggcgaaaaaccatatcaatgtccattttgcggaattaaatttaaccgtactggtcaaatggccactcacatcacacttagacacggtgatcagacacatcaatgtggaacatgtgagaagacattttccactggctacaggttaaaacatcacgaacaaatacattctggcgtaagaccatacaagtgtcatacatgtgatcggacatttacacaaaaaagaggattaagaaatcatgaaatgctgcaccggaatgagaaacgatataaatgtaaatattgtgatatggtatttgcacagccatctggacgcagaggTCACGAAAAGAATAAACATATAAATATAGATGACTATACTGGTTTGAGGCCATTTAAGTGA
- Protein Sequence
- MEQTYLENIKIEPSLAEPQLIKCSEVFRNNSSGKYCYICYHCGNEYDSDEQVIAHLEAEHILITEDDVDVKFEELTNFEEVVNNDLKLQINQETSFQNYESSINFHEELSSNSDKNSFNIFSNDDQYVETGMPIESIPTKTNTKSNHMIVQWDSEEVFTCNWCDKTFHKKKTWIDHKRRSHNVEWRKANNYDSFLCDICPSSFTTESKVKNHKKRIHSTESQSNNCQYCGKYFSLRGSLTRHVREVHHIAGVTKEYRCDYCDKVFRNKPLIEIHMNIHKDEATVFTCNWCNKKVHKRKLRDHIRRSHYEEWKNKYGSFSSDKCPSSFTTKIKVEDHKKKLHLTESQSKNCQYCGKYFPLRSSLARHVREVHIAGVSKEYHCDYCKEVFRNKTLIEIHMNIHKDEATVFTCTWCNKKVYKKKNLTDHIRRSHYEEWRITNNYGFFSCDICSSNFASMNGLERHMKRIHLSLIVKEELICTICNEQFENAQKYREHKRLHSKLKTFKCNICDKVVHTAAYLAVHKRRHNADRIHKCTLCSKAFVDQMYLTKHLKTHTKNKTYDCDLCDKKYTLAFTLKIHKRTHTGEKPYQCPFCGIKFNRTGQMATHITLRHGDQTHQCGTCEKTFSTGYRLKHHEQIHSGVRPYKCHTCDRTFTQKRGLRNHEMLHRNEKRYKCKYCDMVFAQPSGRRGHEKNKHINIDDYTGLRPFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -