Dfer008920.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010059456.1:12364-15800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5 3.1e+02 3.0 0.3 3 18 73 88 72 88 0.90 2 17 5e-06 0.00031 21.8 0.4 2 23 242 263 241 263 0.96 3 17 0.023 1.4 10.3 0.1 5 20 273 288 272 290 0.91 4 17 0.33 20 6.7 2.7 2 23 296 318 295 318 0.95 5 17 0.0013 0.078 14.3 2.8 1 23 324 346 324 346 0.97 6 17 1.8e-05 0.0011 20.1 1.3 1 23 352 375 352 375 0.98 7 17 0.11 6.9 8.2 3.7 1 23 380 402 380 402 0.96 8 17 0.0012 0.072 14.4 8.7 1 23 408 430 408 430 0.99 9 17 5.2e-05 0.0032 18.7 3.6 1 23 436 458 436 458 0.96 10 17 5.7e-06 0.00035 21.7 0.7 1 23 464 486 464 486 0.99 11 17 3e-08 1.9e-06 28.8 0.5 1 23 492 514 492 514 0.99 12 17 0.00011 0.007 17.6 0.8 1 23 520 543 520 543 0.96 13 17 1.2e-05 0.00076 20.6 0.7 1 23 566 588 566 588 0.98 14 17 2e-05 0.0012 20.0 1.3 1 23 594 617 594 617 0.95 15 17 1.2e-05 0.00073 20.7 0.5 1 23 623 645 623 645 0.98 16 17 0.0016 0.098 14.0 5.9 1 23 651 673 651 673 0.98 17 17 0.0069 0.42 12.0 0.4 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGGCTGAATCAGAACCAAACTCTGAGATTGTTCAATTTACATTGCAACAAACCTGCAGAACTTGCCTACAGAACATTACTGTCTACGACGGTGAGAATATGGTTGAGATTTTTGACGCTAAAAATTCCAAACAATCTTCAACACAACTTCTGCAGGATGGACTGTTAATGTTCAAATTACAAGTATCCCAGAATGATGGTCTGCCGCAGAAATTGTGCCACCAATGTTTGCAAAGATTTCGTAATATTTCAGCATTTCAAAAAATATGCCAACAATCTCAACACATTTTGCTGCAATATTTTATCCATTCTAAAACTTCAATTGACAATCCTACAGCTGAATCTCGACAGATCTGTGACGAAGAGAAAACAATTATAGACATACAAGTGGCTGAAGAATATTCAGCCGATTTTGAATTTTTCAATATTGAACATATTGCCACAGAAAATGTCCAATTTATTGATTCAAAAGTACAGATACAAGTCGTGGACCATCACCCCAACAAACCGACAAATCACATATTTGATCAAAATGAACTGACGCCCAATAGTCGTAGTGGTGGTGTTATTTTGGCGGGAGATAAAACAGTAGATAATCATAGCAATGATAATAACGATGATTTTATCGATACAGAATGTGATGAGGATAATTGGCAAGAAACTGCAGTACAAAATGAAAGAATTAGATCAAATGATGTTCGAAAAGACAAGGTCAATAAAACGGAATGTCATATTTGCGGAAAGGTTTATAAACGTGAGGCTCTTCTGTTGCGTCACATTGCTTCACATAAAAGTAATGAGGCTGATAATACAACTGGCTGTGGTAAACGATTCTCGAAATCAAAGGCTATGCAACAACATCAGGCTATTGAAGAAGAGAATCTAAAATGTCGTTTTTGTAAGGAATTGTTTGAGAAAAAATGCGATTTAGAAGTGCATCTACAGCAGATGCACCCTCGGGATCGTCCACACATGTGTCCGGTGTGCAAGAAAACATTTCAAAGTGTCTCGAATCGTAATACACATTTGCAATCACATAATAAAGAAGGTTCATACAAATGCGACGTATGCGATCAGGGTTTCAAGAGCAAAGTCTATTTAAGTAAACATCGGAAATCAGTTCATACGGTCAGCATGCATGACTGTCCGCATTGTCTGCTGAAATTCGACAATGCCACCAAATACGAATATCACTTGAAATCACATGATCCAAATAAGAAATATAAATGCAAATATTGTGATAAATCGTTTCTGCAACATCATCACTTAGCCAATCACGAGCGAACGCATACAAATAATCGTCCCTATCTATGTAACATATGTGGAAAAGACTTTAAGCAGGAATGTAACTttaaattacatttgaaaacacacagtggaataaggccatacgtttgtagcgtatgtggtaaagACTTTATACAACGAAATTCTTTCGTCATGCATATGCGAAGACATTCTGGTGCTCGGCCCTATCAGTGTGAAATGTGTGGAAAGGGTTTTATacaaaaatcatctctaaccgttcatttgcgcactcataccggtgaacgtccctataaatgtgattcgtgtgataaggcctttgtacaagcacaacaattACGTTATCATCGATATTCAGCACATGGTGGACCGGCCATAATAAAAAAAGAACAACCCGCAAAACCTTCATCGAATGGTCGCATCTATCCATATTGTTGCCCAATTTGTAATAAAGGCTTTAAATTACCTCCATCCCTATCAAATCATATGAAAATCCATAATGAAGTACGAAAACACGTATGCACTCAGtgtggcaattcgtttaagcgtgccgaacatttacgaattcacatcaatgcggtacatttgaaacaaaaaccgtatgcctgtacagtgtgtagtaagacattctcacaggccggcgatcgaaacattcacatgcgacgtcatactggcgaaaaacctcaccagtgtccacattgtcagaaatgttttcgactgttgaaggcacaacgtgctcacattcgaatacatacgggtgagaaaccgtacgtttgtgaattttgtcaagcgagctttatgACCTATACAGCATTGGCAACCCATACAATAAAACATGAAATTGCACAGAGAACACTGAATGCTGCAACTGTACTTAACGATCTAAAAGAGGACAAAGCCGACACTAATAATGAACAAACTTCTGAAACCTTAATAGCAATTACAGTGGAAGATGTGAAGCCATCATTTTTAACATTAGGCACCACAAATATATCAGCTACAGCCGACGATTCGGTTATTTCTACAGTTAATTTATAG
- Protein Sequence
- MAESEPNSEIVQFTLQQTCRTCLQNITVYDGENMVEIFDAKNSKQSSTQLLQDGLLMFKLQVSQNDGLPQKLCHQCLQRFRNISAFQKICQQSQHILLQYFIHSKTSIDNPTAESRQICDEEKTIIDIQVAEEYSADFEFFNIEHIATENVQFIDSKVQIQVVDHHPNKPTNHIFDQNELTPNSRSGGVILAGDKTVDNHSNDNNDDFIDTECDEDNWQETAVQNERIRSNDVRKDKVNKTECHICGKVYKREALLLRHIASHKSNEADNTTGCGKRFSKSKAMQQHQAIEEENLKCRFCKELFEKKCDLEVHLQQMHPRDRPHMCPVCKKTFQSVSNRNTHLQSHNKEGSYKCDVCDQGFKSKVYLSKHRKSVHTVSMHDCPHCLLKFDNATKYEYHLKSHDPNKKYKCKYCDKSFLQHHHLANHERTHTNNRPYLCNICGKDFKQECNFKLHLKTHSGIRPYVCSVCGKDFIQRNSFVMHMRRHSGARPYQCEMCGKGFIQKSSLTVHLRTHTGERPYKCDSCDKAFVQAQQLRYHRYSAHGGPAIIKKEQPAKPSSNGRIYPYCCPICNKGFKLPPSLSNHMKIHNEVRKHVCTQCGNSFKRAEHLRIHINAVHLKQKPYACTVCSKTFSQAGDRNIHMRRHTGEKPHQCPHCQKCFRLLKAQRAHIRIHTGEKPYVCEFCQASFMTYTALATHTIKHEIAQRTLNAATVLNDLKEDKADTNNEQTSETLIAITVEDVKPSFLTLGTTNISATADDSVISTVNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -