Dfer011994.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
salm
Assembly
GCA_027564275.1
Location
JANSTW010052923.1:3127-5874[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0057 0.35 12.2 0.2 1 23 52 74 52 74 0.93
2 16 9.6e-05 0.0059 17.8 1.2 1 23 83 105 83 105 0.98
3 16 4.7e-05 0.0029 18.8 1.4 2 23 114 136 113 136 0.96
4 16 9.6e-06 0.00059 21.0 1.5 1 23 142 165 142 165 0.98
5 16 0.00011 0.0068 17.6 0.7 1 23 172 195 172 196 0.94
6 16 0.15 9.1 7.8 8.1 1 23 199 221 199 221 0.99
7 16 2.8e-05 0.0017 19.5 0.5 1 23 227 250 227 250 0.97
8 16 3.7e-05 0.0023 19.1 0.4 3 23 260 280 258 280 0.96
9 16 0.38 23 6.5 0.1 1 23 286 309 286 309 0.95
10 16 0.0089 0.55 11.6 1.1 1 23 402 424 402 424 0.95
11 16 0.00044 0.027 15.7 0.5 1 23 472 495 472 495 0.98
12 16 2.2e-08 1.4e-06 29.2 0.3 1 23 501 523 501 523 0.99
13 16 1.9e-06 0.00012 23.2 1.4 1 23 529 551 529 551 0.98
14 16 0.12 7.3 8.1 1.8 2 23 557 578 556 578 0.96
15 16 0.00013 0.0081 17.4 0.2 2 23 585 607 584 607 0.96
16 16 1e-05 0.00064 20.8 2.2 1 23 613 635 613 635 0.94

Sequence Information

Coding Sequence
ATGAAAAAATGCACCAATAAAAAGTCGGATATAGATCCGCTAAGTATTCGATCATCAACTGCAGATTTAAAAAAGAAGACTACGAAAAATGCTAAAACAAACCCCAAATTAAAGAAGAGCAATAAGAAAACAGACAATTTAATTAATCGAAAATATAGTTGTGATATTTGTCAACAATCGTTTAGGCTAGCTAAAGAAATTCGCCAACATATTGGGGACCATGTTTCGTTGCTCAAAAAGAAACCATACAAATGTGACTTTTGTCAGAAGACTTTTCGAAGCAATGCGGTATTGTCGATTCATCTAAAACTTCACAATCACCTCAAAAAAGATGAAAATCAATGTTTAATTTGTGATCAGTCCTTCGAAAGTAACAGTCACTTGTACATCCACATGAGCATGAAGCACAAAGGCATAAGGCCGTATCGATGTGAATTTTGTACAAAGGTTTTTTCGCAGCGTAACACATTAAGCGTCCATCAACAGACAGCTCATCTTGGTCAACAAAATAAATACGAATGCACAGTGTGCAAGATGACCTTTGAATCGGCCGACAAACTGACCAGCCATATGGACGAAGTTCATCATAAGACATACAAATGTTTGTACTGTATAAAATGTTTTCGTTGTTCTTACGAATTACAAAAACACGAACGTACCCACACTATGGAACGTCCGTACAAATGTACAAACTGTGACGAAACGTTTTCGCTACAAAATAGTCTACAACTTCACATAGAACGAGTGCACAAAGTCAGCGAAGAGCGTCCAGTTCATTGTCCACTTTGTGACTACAGCTTCGTGCAATACAGTGATCTTAATTCGCATATTTTTGTGCACATTGATGAAAGTCCTTTCGAATGTCCCGACTGTGCACTGCTATATGAAGATTTGAAAATGTTTCAAGAACACGTTAAACTGGAACATGATCGTCCGTTTGATGTAAAGATCGAACCTGATGCACAAATTGCTAGCGATTCTGTTGTCTCAATCGTTCCAAACGATTTGAATTTATCAATTGAATTGAATAAAAGTAGTGAGATAAAAGCGGAACATTCTCCAGATCATTCATTTGAAGAACCAGATTTCTTTGATACTGGGTTCGATGATGAGTTGACAAATGACGTGGCCATAGAAGAAGAGACTGCAGTTGCTAAAAATAATGTCGAAATCGATTTGGCCAAAATGGGCGTAACAATTTCGTATAATTGTCCAATGTGTAAATTGTCATTTACAGAATTACAAAAATTTAATCAACACACTGAAGAGCATAGCAGCTGTACGGAGGATGTAGAAAATGACAAGATTATCGATAAAACCGTTACGCCTAAAATGAGAAAAACAGAAAAACCGACTAAAATTCGTGAACCCGTATCGTTGGATTGGCAAAAACGTGATAACAAAGTTCGAAATTATTCATGTGACATTTGCAACAGTTCGTACACACTGGCCAGCTCATTACGGCTGCACGTTCGCcgaacacacatgggcattaaaccatacgaatgtaaagtgtgtggatacgcatttgcgcagtcgagcgatttaataaaacatatgcgaaaacacacaggcgaacggccatacaaatgttctgtgtgtaatgttggctttactcaaaatcgaaatctaaaaaatcacatgaaattgcacacggctaacccaagtaaatgtaaatattgcaataaaacatatctgatggacacaagcctcattcaacatgtaaaaaaacatgaaggacccaatgccaaggaatgtgaagtatgtaagataccgtttgctcatccggcagatttaaatttgcatatgaaacgattgcacggaacggtgaaaagccatgtttgtgatgtttgtggcaaaaCATTTAAAAACCGAAACGAGCTACGAAAACATTCATACATTCACACAGATAAAGTGGCTTCTACTGTTATTTCCGATGTGTCACAAATCACGTACACAATTTCTGCAACAAATGACATACTGGGCACCTCCAGCAAAGTACCTTCGAGCACAACATTGCCCATAATAACGTTGCCAATAGCTGTGGTACAACAACCTCTACAGCAACCACAAATAATGGCAAACATTAATTTAGATTTATCAGAAGCGATGGGCCAACACTTTATAATTACACCGCTTTAA
Protein Sequence
MKKCTNKKSDIDPLSIRSSTADLKKKTTKNAKTNPKLKKSNKKTDNLINRKYSCDICQQSFRLAKEIRQHIGDHVSLLKKKPYKCDFCQKTFRSNAVLSIHLKLHNHLKKDENQCLICDQSFESNSHLYIHMSMKHKGIRPYRCEFCTKVFSQRNTLSVHQQTAHLGQQNKYECTVCKMTFESADKLTSHMDEVHHKTYKCLYCIKCFRCSYELQKHERTHTMERPYKCTNCDETFSLQNSLQLHIERVHKVSEERPVHCPLCDYSFVQYSDLNSHIFVHIDESPFECPDCALLYEDLKMFQEHVKLEHDRPFDVKIEPDAQIASDSVVSIVPNDLNLSIELNKSSEIKAEHSPDHSFEEPDFFDTGFDDELTNDVAIEEETAVAKNNVEIDLAKMGVTISYNCPMCKLSFTELQKFNQHTEEHSSCTEDVENDKIIDKTVTPKMRKTEKPTKIREPVSLDWQKRDNKVRNYSCDICNSSYTLASSLRLHVRRTHMGIKPYECKVCGYAFAQSSDLIKHMRKHTGERPYKCSVCNVGFTQNRNLKNHMKLHTANPSKCKYCNKTYLMDTSLIQHVKKHEGPNAKECEVCKIPFAHPADLNLHMKRLHGTVKSHVCDVCGKTFKNRNELRKHSYIHTDKVASTVISDVSQITYTISATNDILGTSSKVPSSTTLPIITLPIAVVQQPLQQPQIMANINLDLSEAMGQHFIITPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-