Dfer003483.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diadocidia ferruginosa
Gene Symbol
-
Assembly
GCA_027564275.1
Location
JANSTW010073427.1:6832-9028[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-07 1e-05 26.5 1.1 2 23 174 195 173 195 0.98
2 16 0.068 4.2 8.8 1.5 1 23 202 224 202 224 0.94
3 16 6.3e-05 0.0039 18.4 4.9 1 23 252 274 252 274 0.96
4 16 0.0048 0.29 12.5 2.8 1 23 282 304 282 304 0.97
5 16 0.0001 0.0064 17.7 4.7 1 23 331 353 331 353 0.97
6 16 0.0056 0.34 12.3 1.2 1 23 360 382 360 382 0.96
7 16 0.00026 0.016 16.4 0.9 1 23 396 418 396 418 0.99
8 16 1.2e-05 0.00072 20.7 1.5 2 23 430 451 430 451 0.97
9 16 6.6e-05 0.0041 18.3 3.1 1 23 458 480 458 480 0.99
10 16 0.00048 0.03 15.6 2.2 1 23 486 508 486 508 0.97
11 16 1.9e-05 0.0012 20.0 3.4 1 23 514 536 514 536 0.95
12 16 0.00027 0.016 16.4 0.2 1 23 542 564 542 564 0.98
13 16 0.00084 0.051 14.8 2.0 1 23 570 592 570 592 0.97
14 16 1e-06 6.2e-05 24.0 0.3 1 23 598 620 598 620 0.98
15 16 3.4e-06 0.00021 22.4 1.6 1 23 626 648 626 648 0.99
16 16 0.0002 0.012 16.8 0.8 1 23 654 676 654 676 0.97

Sequence Information

Coding Sequence
ATGGACTTCCAAATTGAATCCAAGAATCTGGTCGAGTTGTGTCGAGTATGTTTAAAAGATGAAGATGATCAGAGTGACATGTTTGGAACCACAATTGATTCGCTAAATGTCTCACTCTCGGACTTGTTTACATCGTTCACTGCCCTACATGTGGACCGAATCGATGGATTTCCGCAAGCTATTTGCGCAAAATGCTTGGACACATTAGTGTCCGCCTACGAGTTTCAAATGAAATGTATTAAGAGTGACCATGACATTCGTATGGCTTTGGGCAATTTAGCTCAACAATCGGCGGTTAAAAACAAATTTGAAACAATGACGGGAAATCCATATAAATCGGAATCAACTGTATATGTGGAAGAACAATATTTCGTAAAGACTGAACATTTCGAACAGAGCATGGAACATGACGAATCTGATGACTTTTCATCAGTAGATGATAATCCACTATTTACTTCTCCTGTTGTGAGCTGTGATACCACTGATTTGGATATGGATGCAAACTCTAAACCACTAAAtaagtgtaaaatttgtagtaaatcatttagtgaaccatcaaatttgcttcgccatatgaaagtgcatgatccgctcgataaaccgtttgaatgtaaaatttgtaaaagaaaatttggCTCCGAAATCGATAAGAGCAGACATGAAACTAAACATACAATGGTCGAACCATCAAGAGATGCCATTGAACCGATCAGAGAGGACACAAATAATTTAGAGAATTATGTGAAAAAGTTGCACAATTGTCAAATTTGTAATAAAACATTTGTTAAACGTTCAAATTTTACACGACACTCTAAAATACATGAACCCGCCGAGGGTAAACCTTTTTCATGTCAAATTTGTAAAAGACACTTTGCCACCGAAATCCATATGATTCGTCATGAAATTTCGCATTCTGATGTACTAACAAAAGAACTTGATAATTCAGAGTACAATGAACCGCCAAGTACTGACCCTAACCGATCGAAAATACATACTTGCTTAATTTGTGATAAACCGTTTGATAATCCTTGTCATTTAAAGCGACACTTAACAGTGCACGACGCCGAGGGTAAACCGTTTGAATGTGACATATGCAAGAGACGGTTTGTTACTAAAGAGCGTTTGATCTTTCATCGAATTACACATTCTAAAGAGGTTACTGAAGCTAGTAACGAATCACAGATGTACAAATGTTTGGAATGTCCACGAGAATTCGCAAAACAAGCATGCCTTTCGGCACATACGAAGGTCCATGAAGACAAGAACTGCAGTACAACGACTGAGCGTTCCTGTGACTACTGCAAAGAAACCTTCTCAAAATTAACCGATCTAATGCGACACATTAAAACGCATACGGTGAGTGAAGACAAGTACAGATGTAAAACCTGCGATAAAACATACACAGTTCGTGAACGATTTGTAAGACATCTGAGGACTCATCTGGGCATTAAACTGCATGTTTGTTctgtttgcaataaaggattccagacttctacgtcactcaaagaacatagtcgattgcacagcggagaaaaaccatttctatgcaatgaatgcggcaaatcatttcatacaaacagctgtttaacaaatcacatagcaatacatgccaacgtaaaaccgtttgaatgtaccgaatgtccgatgcgatttcaagccaaaggtacgctcaagtggcacatggtaacacatacaggcgtcaaagcttatagatgtgatacttgtggatcatcgtttaccaaaggatattctctgaagaaacacaagcttcttcataccggggaacgaccttttgcgtgtaacgtgtgtgaCATGAGATTCAAATCATCCGGCACCCTCATTATAcatatgcgcacacataccggagagaaaccatatcaatgtgagttttgtagtcgctcttttgcacaaagtggcgacttaaataagcataaacgatcacacgtcggtgaaaatacgtattgctgtaaggaatgtccggccgcatttcgactgaaggtggagttaaataaacatattcaggagcaTTATTTGCAAAGGAAAAATACGGCAGAATCTAATGAAAAATTAATGTCGACAGCGGCGGCAGAATAG
Protein Sequence
MDFQIESKNLVELCRVCLKDEDDQSDMFGTTIDSLNVSLSDLFTSFTALHVDRIDGFPQAICAKCLDTLVSAYEFQMKCIKSDHDIRMALGNLAQQSAVKNKFETMTGNPYKSESTVYVEEQYFVKTEHFEQSMEHDESDDFSSVDDNPLFTSPVVSCDTTDLDMDANSKPLNKCKICSKSFSEPSNLLRHMKVHDPLDKPFECKICKRKFGSEIDKSRHETKHTMVEPSRDAIEPIREDTNNLENYVKKLHNCQICNKTFVKRSNFTRHSKIHEPAEGKPFSCQICKRHFATEIHMIRHEISHSDVLTKELDNSEYNEPPSTDPNRSKIHTCLICDKPFDNPCHLKRHLTVHDAEGKPFECDICKRRFVTKERLIFHRITHSKEVTEASNESQMYKCLECPREFAKQACLSAHTKVHEDKNCSTTTERSCDYCKETFSKLTDLMRHIKTHTVSEDKYRCKTCDKTYTVRERFVRHLRTHLGIKLHVCSVCNKGFQTSTSLKEHSRLHSGEKPFLCNECGKSFHTNSCLTNHIAIHANVKPFECTECPMRFQAKGTLKWHMVTHTGVKAYRCDTCGSSFTKGYSLKKHKLLHTGERPFACNVCDMRFKSSGTLIIHMRTHTGEKPYQCEFCSRSFAQSGDLNKHKRSHVGENTYCCKECPAAFRLKVELNKHIQEHYLQRKNTAESNEKLMSTAAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-