Dfer008831.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010080305.1:3269-6580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.06 3.7 9.0 7.6 1 23 2 24 2 24 0.98 2 23 0.045 2.8 9.4 6.9 1 23 88 111 88 111 0.97 3 23 1.3 80 4.8 0.4 3 23 115 135 113 135 0.96 4 23 0.00016 0.0096 17.1 4.6 1 23 151 174 151 174 0.95 5 23 0.057 3.5 9.1 0.1 2 21 177 196 176 197 0.93 6 23 0.0039 0.24 12.7 7.8 1 23 222 244 222 245 0.96 7 23 5 3.1e+02 3.0 0.5 13 23 284 294 278 294 0.83 8 23 0.031 1.9 9.9 0.3 2 23 301 322 300 322 0.97 9 23 4.6e-05 0.0028 18.8 2.1 1 23 328 351 328 351 0.97 10 23 1.5e-05 0.00093 20.3 1.8 1 23 357 379 357 379 0.96 11 23 0.0018 0.11 13.8 0.7 1 23 387 409 387 409 0.97 12 23 3.9e-05 0.0024 19.0 0.7 1 23 415 437 415 437 0.98 13 23 8.2e-06 0.00051 21.2 2.3 1 23 443 465 443 465 0.98 14 23 0.003 0.18 13.1 0.4 1 23 471 493 471 493 0.99 15 23 0.00036 0.022 16.0 2.6 1 23 499 521 499 521 0.98 16 23 0.002 0.12 13.6 2.2 1 23 719 742 719 742 0.93 17 23 0.088 5.4 8.5 0.7 1 21 745 765 745 766 0.96 18 23 0.00027 0.017 16.4 0.8 1 23 781 803 781 803 0.98 19 23 0.00054 0.033 15.4 0.9 1 23 811 833 811 833 0.98 20 23 9.1e-06 0.00056 21.0 0.2 1 23 839 861 839 861 0.98 21 23 6.5e-07 4e-05 24.6 1.4 1 23 867 889 867 889 0.98 22 23 5.7e-06 0.00035 21.7 0.9 1 23 895 917 895 917 0.99 23 23 0.034 2.1 9.8 5.1 1 23 923 945 923 945 0.98
Sequence Information
- Coding Sequence
- ATGCATAAATGTGAAGTGTGCTTGCGAACATATCAACATAAACCACATTTATTGCGCCATTATCGCCAACATACTGCCACAGGTTACCATCAGGAACATATAGCAAAAAGTCCGAAATGTATTCTGAATGGAAAGGAAAAAACTACCAAAAATGAAATCACTTGTGTAATTGATGAGAAAAAAGATGATGCTTTAAATTCTCGTAGAACAAGAAGAAATGCTAGCACGGAAAAATGTCTCGATGATGCTATTGCTAAACCATACAAATGTAAAATTTGCTCCAATTCATACATTCGTTATCAACATTTTTTGCGTCATCATCGGCAAGAACATCCCGTCAATTGCGAAAGCTGTACGATTGATTGTGTTAACACAGCTGGCTATTCAGCTCATATCAAAACCCACCCTGACTGTAGTAAGGCAATAAAACAAATGCCCGCTGAGAAACGATACGAGTGTAAATTATGTTCAAAATATTTTAATAGAAACGAAAACCTTAAGAGACACCATCTACAACAACACGGTTTAGTGTGTTTCCAGTGCCTTGAAATATTTAGTAGTCAAAACGATTTATCAGCTCACATTTCGAAGAATCCCATGTGTAAAGATAAGAGAAAAATAACTGAAAGAAAAAAAATTGAAGATGGAATCGGGAAAATATTATTTCAATGTTCTCTGTGTCCGTTGAGTTATGCTCGAGCATGCCATTTACATCGCCATCAACGAGAACATCATGCATCAACGTGTGTCTCTTGCAAATTGGATTGTGGCACTTTACCAGCATATCGTCAACATTTAATCGACCGTCCGGAGTGTGTGGTCAAACGAAAGAaaaaaggatatcgttgtaaggatcatttgaaaactcatatGGCCATTCACAGCGACATTACATCAATTAAATGTGAAATTTGTGGATTTGGTGCGCTTAACAAATCCAAATTGAAGTACCATATGCTCactcattcggacgaaagaccgttttcgtgtgagaaatgttcaacttcatttaagacaatcggttcattaaatcatcacatgaaagtaattcatgcgactaaaatggcatttaactgtatgcactgtggcaaggcttttaaacaattgggcaatttaaaaaatcacgaaatacggcactccggtcaaggagagcgcacatttgcatgtgacatctgtggtaaaggatttttatttaaaattgatttacgctatcacaaacgaacacataccggtgaacgtccatatccatgtaaactttgttcagctcgatttgctgacatcagtaatttacataaacatatccgcatacatacaggcgaaaaaccatacaaatgtactgtctgccaaaaggatttcaatcaacaaagttccctgaatagccacaagaaaatccatataatttgcaagccatttaaatgtagacattgtgccaaggaatttggcctggaagctgatctgcaagtgcatgtacggatccatggtgacatacagaaattcaagtgtgatatttgtgacacagaatatgatcaactatctcacatgaaatcacaTCGTCGCTTACATTTCTTCACAATTAATGATGCGGAATCGTTGAGGAATGAAATTATGCCAGACATAACAGATGAATATTTTAATATTGGCTCAATGGAAAATGATCCGCCGAGTACAATTAGTTCAAAAATTTACGACAAACCTTCAAACCTTGATAATCATTGTTTGTCATCATTGACGGAAGAGTCAATTCAGGATGCGGAATCGTTGAGAAATGAAATTATGCCAGACATACCAGATGAACATTGTAATGTTGGTCCAATTGAAAATGATCCGCAGAGTGAAATTGGTTCAATAATTTACGCAAAACCTTCAATCCTTGATAACAATTGTTTTTCATCATTGACAGTAGAGTCATATAAAATTGAATCTTTATTAAATGATGAGAGTCAGTTGAACAATAGACTTTCTCTGAAACTAGATGAAGACTATAATTTATCTAACGACGATGTTTTTCAAGATGAATTATATTCCGCCGATTTATCAGATAATGATGAAATTGTGGCTCAAGAAAGTATAGCTGCTGATAACAATTGTGATTCTGATAAGACTGTCAAAAGACCAACTAGATCCACAAAAGTTAAAGAGAGCATCAAATTAGAGTTTGATTGTGATGAATGCGATGCATCATTTGGCCGCAAGGAAAATCTTTGTTTGCATAAATTTAGAAATCATTCAACATACGTATGCGACGAGTGTGGCATTGACTGTCTGCACTGGCGAGGATACAGAAAACATATGCGTGAGAATCGGCTCAAGGCTCACGCAAATATCCATCGCGAAGACATGTTCAAATGTTCGTACTGCGCAAAGGGCTTCAAGGTGTTGGGTAATCTGAAGAGTCATGAACTACGGCACGAAGGtggcgataagcaaaaatttccctgtacagtatgtgcgaaaatatttatgtttaaattggatttaaaatatcatatgcggacgcataccggtgaacggccctatccatgtacgtattgtgaagcacggtttgcggacggtagtaatttgaaaaaacacttgcgcatacatacaggcgagaaaccatttcaatgtaatatttgtggcaaagatttcaatcaattgagttctttgaacaatcatcgcaaatcacatgaaacattcaaaccatacaaatgcgaatattgtgcaaaaacatttgctaccgacaacgatttgagaaaacatttacgcattcatggtgacataagaatgtttaaatgtgatatgtgcgacaatgaatacgaacaattgtgtcatttaaaatcgcacaCTCGATTACACTATGGTAATAAAGTAAATAACGTTAAAGCAGAGGCAACTCGTATATAG
- Protein Sequence
- MHKCEVCLRTYQHKPHLLRHYRQHTATGYHQEHIAKSPKCILNGKEKTTKNEITCVIDEKKDDALNSRRTRRNASTEKCLDDAIAKPYKCKICSNSYIRYQHFLRHHRQEHPVNCESCTIDCVNTAGYSAHIKTHPDCSKAIKQMPAEKRYECKLCSKYFNRNENLKRHHLQQHGLVCFQCLEIFSSQNDLSAHISKNPMCKDKRKITERKKIEDGIGKILFQCSLCPLSYARACHLHRHQREHHASTCVSCKLDCGTLPAYRQHLIDRPECVVKRKKKGYRCKDHLKTHMAIHSDITSIKCEICGFGALNKSKLKYHMLTHSDERPFSCEKCSTSFKTIGSLNHHMKVIHATKMAFNCMHCGKAFKQLGNLKNHEIRHSGQGERTFACDICGKGFLFKIDLRYHKRTHTGERPYPCKLCSARFADISNLHKHIRIHTGEKPYKCTVCQKDFNQQSSLNSHKKIHIICKPFKCRHCAKEFGLEADLQVHVRIHGDIQKFKCDICDTEYDQLSHMKSHRRLHFFTINDAESLRNEIMPDITDEYFNIGSMENDPPSTISSKIYDKPSNLDNHCLSSLTEESIQDAESLRNEIMPDIPDEHCNVGPIENDPQSEIGSIIYAKPSILDNNCFSSLTVESYKIESLLNDESQLNNRLSLKLDEDYNLSNDDVFQDELYSADLSDNDEIVAQESIAADNNCDSDKTVKRPTRSTKVKESIKLEFDCDECDASFGRKENLCLHKFRNHSTYVCDECGIDCLHWRGYRKHMRENRLKAHANIHREDMFKCSYCAKGFKVLGNLKSHELRHEGGDKQKFPCTVCAKIFMFKLDLKYHMRTHTGERPYPCTYCEARFADGSNLKKHLRIHTGEKPFQCNICGKDFNQLSSLNNHRKSHETFKPYKCEYCAKTFATDNDLRKHLRIHGDIRMFKCDMCDNEYEQLCHLKSHTRLHYGNKVNNVKAEATRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -