Dfer006407.1
Basic Information
- Insect
- Diadocidia ferruginosa
- Gene Symbol
- -
- Assembly
- GCA_027564275.1
- Location
- JANSTW010088803.1:3284-7543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0021 0.13 13.6 0.8 1 23 238 260 238 260 0.98 2 18 4.2e-06 0.00026 22.1 1.5 2 23 267 288 267 288 0.97 3 18 1.6e-05 0.00098 20.3 1.3 1 23 294 316 294 316 0.98 4 18 7.9e-07 4.8e-05 24.4 0.7 1 23 322 344 322 344 0.98 5 18 0.001 0.064 14.5 3.3 1 23 385 408 385 408 0.95 6 18 6.3e-06 0.00039 21.5 0.8 1 23 413 435 413 435 0.98 7 18 1e-06 6.1e-05 24.0 2.3 1 23 441 463 441 463 0.98 8 18 0.00025 0.015 16.5 2.9 1 23 469 491 469 492 0.95 9 18 8.7e-05 0.0053 17.9 0.2 1 23 498 520 498 520 0.97 10 18 4.2e-05 0.0026 18.9 0.6 1 23 526 548 526 548 0.98 11 18 0.027 1.6 10.1 8.4 1 23 554 576 554 577 0.93 12 18 3.9e-07 2.4e-05 25.3 0.9 1 23 583 605 583 605 0.98 13 18 5e-06 0.00031 21.9 4.3 1 23 611 633 611 633 0.99 14 18 6.5e-08 4e-06 27.8 2.4 1 23 639 661 639 661 0.99 15 18 4.2e-06 0.00026 22.1 4.7 1 23 667 689 667 689 0.99 16 18 1.2e-06 7.2e-05 23.8 0.5 1 23 695 717 695 717 0.98 17 18 3.3e-07 2e-05 25.6 1.5 1 23 723 745 723 745 0.99 18 18 9e-06 0.00055 21.0 3.7 1 23 751 773 751 773 0.99
Sequence Information
- Coding Sequence
- ATGGATGAACCAAATTTAATTAGCCTAAGCACAATATGCCGTGGTTGTTTGTCGGATCGGCGGGAAGCATTACGATCGATTTTTAATTCAAATATTTTGGATATATTTATGAGATGCACCAATTTGGAGGTTGATGCCTCTGACGGACTTCCAGCAAATCTGTGCACTTCTTGTGTATTCAAATGTGTATCATGGCATTCATTTAAACAACAATGTGAACAAACCGATTTAATATTAAGAGATCAACTGATCGTCAAACAATGTAAATCCACAGAAAACTCAAAAAATATCTTAACAAAATTCCCGGAGGTAGATGAAATATGTGAGGAAATAGAGAAATCTGTAGACAATAGTACAGATTGTACAGAAATTGTCGAAGATTCTGTAAAAACTAATATTCTAACTATTGAGGATGAACAAGAAAATGTTATAATTGAAGTAAACGACAGCCACTTAGATAGTACAGCGAATGAGGCATCAAATGATTCGAAGTGTCCTGATACTGCAACGGAAGAATGCTTTGAGGAAAGTGGTCAATTGACTGAAGAATTTATGATTACAAATAATACGCTGGATGTTACGGAATACGATGACGATTTTGTTGTGGAGGAAGATGAAACATTTGAAATGGATATAGAGAAAGATAATCCTGCCAAAAGTGTTGTCGAAGAGCTAGAAAAAGCTAGCAAAAAGTTTGAGCCAAGAGGAAAATTTGTTTGTAATATTTGTTTGAAAATTTTTCGTCTTGAATCTCGACTGATAGCCCATCACCGCGAGCATTTAGGACAAAAGCCAGAAGTGTGTAAAGTGTGCGGTAAAGAATTTAATAATCAACGTGCATTGAGAAGACATCGTCAAAAACATAACGATCTGAAACAATACGCATGTACAGAGTGTGGTAGAACGTATAAATATCAAACATCGCTAACACTTCATCGAAAAATACATCAAAATGTTCGCAGTTTTGTTTGCGATTTGTGTGGAAAGTCATTTGTTCGAGCCCATGGCCTTCAAAGTCATCAACTGACGCATCAaaCTGAAATATTGATCAATGAAAATGATTTAAATTTAAAAGAATCAGTTGAACACAACAATAGTCCAGTGCAATTGATATTAAAAGAGCTGAACAAAGATGCAGCAGCagggaaaccatacaaatgttatcaatgtaatagattttatacgtctctgataaatttaaaaagacataaaaaagcacagcatggagaaaggccatttaaatgtgagctttgcgacaagacattttcgatgtcttcaagtttagcaacgcacaccatttcccattctattgataaaccatttaaatgtgatgtatgtactaaatcattttctcgatcttataatttaacacaacataaactaattcactctgaagttaaatcatttaattgtgatgagtgtgaaaaatcttttgttcatccaacgaggctggccagacataagatgatacatcatagtggtgtgaaggcatttaattgtgacatttgtggtgcactgttttcgcaatcttcagatcttacttcgcacaagataagtcacaccaatgagaaaccatttcaatgtgatgtatgttctaaactattttctcgtccattcaatttaattcagcataaacttatacattcagatgtaaaggaacataattgtgatctttgtaataaatcatttttccatgcttccagattaaagagacacaaatttattcatcattcgggtgtcagaccgtttagttgcgatatttgcgaaaaatctttctcgcaactatccgatctgaaatcacatactagaatacacagcggcgtaaaaccatttaaatgtgacaaatgctttaagacttttacttactcaagtggcctaacgtcgcacagacgaacacataccggagaaaaaccatacaagtgcgatttatgtggcaaattcttttctcaatcgtctgaccttaagtcgcatactagaacacatactggtgataaaccatacaaatgtgacatgtgtgataaaacattttcgcattcctttggattaacctcgcacaaacgaacccattctggaacaaaaccatttaaatgtgatatttgcggcagagatttctcacagtcagctaatctttccaaacataaactggttcattcgggtgaaaaaccatttcaatgtgacatttgttttaaattctttactcaatcgtcaagtttggccacacatatgcgcatccatagtggcatcaaaccttttaaatgtgatctatgcggtaaatcgttttctcaatcgatttgtttgtcgaaacacaaacgtattcattcaaataatAAATCTATACAAGATGAAACAGTAATTACAGAAAAGGTTCAGCAGGTCACGAGCTGA
- Protein Sequence
- MDEPNLISLSTICRGCLSDRREALRSIFNSNILDIFMRCTNLEVDASDGLPANLCTSCVFKCVSWHSFKQQCEQTDLILRDQLIVKQCKSTENSKNILTKFPEVDEICEEIEKSVDNSTDCTEIVEDSVKTNILTIEDEQENVIIEVNDSHLDSTANEASNDSKCPDTATEECFEESGQLTEEFMITNNTLDVTEYDDDFVVEEDETFEMDIEKDNPAKSVVEELEKASKKFEPRGKFVCNICLKIFRLESRLIAHHREHLGQKPEVCKVCGKEFNNQRALRRHRQKHNDLKQYACTECGRTYKYQTSLTLHRKIHQNVRSFVCDLCGKSFVRAHGLQSHQLTHQTEILINENDLNLKESVEHNNSPVQLILKELNKDAAAGKPYKCYQCNRFYTSLINLKRHKKAQHGERPFKCELCDKTFSMSSSLATHTISHSIDKPFKCDVCTKSFSRSYNLTQHKLIHSEVKSFNCDECEKSFVHPTRLARHKMIHHSGVKAFNCDICGALFSQSSDLTSHKISHTNEKPFQCDVCSKLFSRPFNLIQHKLIHSDVKEHNCDLCNKSFFHASRLKRHKFIHHSGVRPFSCDICEKSFSQLSDLKSHTRIHSGVKPFKCDKCFKTFTYSSGLTSHRRTHTGEKPYKCDLCGKFFSQSSDLKSHTRTHTGDKPYKCDMCDKTFSHSFGLTSHKRTHSGTKPFKCDICGRDFSQSANLSKHKLVHSGEKPFQCDICFKFFTQSSSLATHMRIHSGIKPFKCDLCGKSFSQSICLSKHKRIHSNNKSIQDETVITEKVQQVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -