Basic Information

Insect: Diadegma fenestrale
Gene Symbol: -
Assembly: GCA_037043255.1
Location: CM073311.1:19367901-19369426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.4e-05 0.0047 17.5 0.6 2 23 83 104 82 104 0.97

2 9 0.00049 0.043 14.5 1.4 1 23 106 129 106 129 0.95

3 9 0.00097 0.086 13.5 0.8 1 23 134 157 134 157 0.95

4 9 2.4e-05 0.0021 18.6 1.5 1 23 163 186 163 186 0.95

5 9 0.00037 0.033 14.8 1.7 2 23 193 215 192 215 0.96

6 9 0.00011 0.0096 16.5 0.7 1 23 220 242 220 242 0.96

7 9 1.3e-05 0.0012 19.4 0.3 2 23 249 269 248 269 0.97

8 9 4.3e-06 0.00038 20.9 0.1 1 23 275 297 275 297 0.97

9 9 1.1e-05 0.001 19.6 0.1 1 23 303 325 303 325 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.4e-05	0.0047	17.5	0.6	2	23	83	104	82	104	0.97
2	9	0.00049	0.043	14.5	1.4	1	23	106	129	106	129	0.95
3	9	0.00097	0.086	13.5	0.8	1	23	134	157	134	157	0.95
4	9	2.4e-05	0.0021	18.6	1.5	1	23	163	186	163	186	0.95
5	9	0.00037	0.033	14.8	1.7	2	23	193	215	192	215	0.96
6	9	0.00011	0.0096	16.5	0.7	1	23	220	242	220	242	0.96
7	9	1.3e-05	0.0012	19.4	0.3	2	23	249	269	248	269	0.97
8	9	4.3e-06	0.00038	20.9	0.1	1	23	275	297	275	297	0.97
9	9	1.1e-05	0.001	19.6	0.1	1	23	303	325	303	325	0.98

Sequence Information

Coding Sequence: ATGGACAGAAAATCGGGATCCGAAGCTCCGATCGtcccaaaaatcgaaatcacTCCGCGAATAAAGCGATCTGCCTCCGTTACTAAAGAATTAATAAACGAGCATGGAAGTCAGATAAAAAGAGACGACGACGCTCATCAGGAGGGAAGAGCGTCCGAGAGATCGAGAAAGGAATATTgtcgaaagaataaaataggAATATCGGGGAAAAAAGATAGCACAAAAAGGGAGAAACGGAGAGGCCTAAAGTGCGATGATTGTGggagaaatttttggaaaaagtcgaatttgGTAGAGCATTTGAAACAGCATCGTCACaaatgtgaaaattgtgaaaaatcttttagaCTGGTTCGTTACTTGAACGCCCACGTGGACAAAGTGCATCGGGTTCGATATTACGAGTGTGGCCTTTGCGATTACAAGAGCAACAACAAGGGCAcgctaaaaaatcattttattcgattgcACACGAGCGATTACGAGTTCGCGTGCGATATTTGCGGCAAAAAGTTCAAAATACGAAAAGCTCTGAATCATCACGTCAAGCTCAATCACATCGACTCGGCCCCAATCGTCTGTGACGTCTGTGGCCATTACAGTAAAAATCTTCACGCTCTAAAGGCCCACATGAGATATCGACATTACAAGCCCGAATTTGTGTGTCACATTTGCAAGCGTGGCATGACGACAAAAGAAAATCTCGAGCAACACATCGACTGGCacaaaactcgagaaaaagtTTCGTGTCCAACTTGCGGTAAGAAATTCCGAGCCCGCGATCTCGAAACTCACACGAGAGTTCACACCGGCGTCAAACCGTTTGCCTGTCCTGTCTGCGGCAAAAACTTTCGACGTCAAACTGCCCAGGAACAACACATTCTCATTCACACAGGCAAAAAACCTTACGTCTGTGACATTTGTGGACGAGCCTTTGCCCAGAAACCTGGACTTATGGGCCACAGGAAAAACCATCCTGGACCTTTGCCACCATTCCCTGTTGtttctattaaaaatattatcacTCAGTACGTTCGAGAATACGCGACGAAGAATATTCCCGATTTCCGAGTTACTCCTGACGATATTTAA
Protein Sequence: MDRKSGSEAPIVPKIEITPRIKRSASVTKELINEHGSQIKRDDDAHQEGRASERSRKEYCRKNKIGISGKKDSTKREKRRGLKCDDCGRNFWKKSNLVEHLKQHRHKCENCEKSFRLVRYLNAHVDKVHRVRYYECGLCDYKSNNKGTLKNHFIRLHTSDYEFACDICGKKFKIRKALNHHVKLNHIDSAPIVCDVCGHYSKNLHALKAHMRYRHYKPEFVCHICKRGMTTKENLEQHIDWHKTREKVSCPTCGKKFRARDLETHTRVHTGVKPFACPVCGKNFRRQTAQEQHILIHTGKKPYVCDICGRAFAQKPGLMGHRKNHPGPLPPFPVVSIKNIITQYVREYATKNIPDFRVTPDDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00829733;
90% Identity: iTF_00829733;
80% Identity: -