Dfen005575.1
Basic Information
- Insect
- Diadegma fenestrale
- Gene Symbol
- -
- Assembly
- GCA_037043255.1
- Location
- CM073311.1:19359933-19363477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0049 0.43 11.3 2.5 1 23 47 70 47 70 0.97 2 17 0.0017 0.15 12.7 0.1 1 23 76 99 76 99 0.91 3 17 0.48 43 5.0 0.9 2 16 144 158 143 160 0.87 4 17 5.8e-06 0.00051 20.5 0.4 2 23 160 182 159 182 0.93 5 17 0.0041 0.36 11.5 0.9 1 23 187 210 187 210 0.94 6 17 4.5e-06 0.0004 20.8 0.1 2 23 223 244 223 244 0.96 7 17 0.00094 0.083 13.6 0.7 1 23 250 272 250 272 0.95 8 17 2.2e-05 0.0019 18.7 0.4 1 23 278 300 278 300 0.98 9 17 0.0078 0.69 10.7 0.9 1 23 471 493 471 493 0.98 10 17 6.9e-07 6.1e-05 23.4 3.4 1 23 499 522 499 522 0.97 11 17 0.022 1.9 9.3 1.9 1 23 529 552 529 552 0.94 12 17 7.5e-06 0.00067 20.1 2.2 1 23 558 580 558 580 0.98 13 17 0.016 1.4 9.6 0.1 3 23 587 608 585 608 0.92 14 17 1.6e-05 0.0014 19.1 0.4 1 23 615 637 615 637 0.98 15 17 1.8e-05 0.0016 19.0 0.2 1 23 641 663 641 663 0.98 16 17 0.00035 0.031 14.9 0.2 1 23 668 690 668 690 0.95 17 17 2e-05 0.0017 18.8 0.8 1 23 696 719 696 719 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTTTGCGAAGTAAAAATCGAGTACGACGAGGTAAACGAATCCTCGTACGCGAACGAGAGCGACGATCTGATTTACTTCAACGACGAGAACGACGAGAACGAAGAGAACTGCGAGAACGATGTTCACGGTGATTATTCCTGTCGGAGGtgtaacattttatttaaaacacGAAACATGCTCAAAAGTCATACAAAGTCAGTGCACGAGGCGATACAGTGTTACAAATGTCAAATATGCCAGAAAACTTACAACGAACCAGCGGCTTTCGATGCTCACATTGTTGGCGAACACGAGATCGATATCGCGCATGCTCACAATTTTTTGGACCGTTTGACATTGTACCGAGTGTCAAAGAACGAACCAGAGAGTGCTCCGGACTCGAAAATCATCGTCACGACCTTTGAGACGAAGGCGGACGTTCTGTCGTGCAGCAACTGCGACTACAAGTTCATACATCGCGGGGAATATTGCATCTGCGATTATTGCGGAAAATCTTATCGCACTCCCGAAGACCTTGAAGAGCATCGCAAGTTCGTACATTTCAGGGGTAAGCACGAGTGCAAAATTTGCCATCGTGGACTCGCcagcgagaaaaatctcgacgaACACATGGCCAACAtgcacgttaaaaaaaaaactatgaaaaaacgaaaacccGCCGTTTGCGAAGCTTGTGGCAAAATGTTCTCGGACCGTCCAAAACTCACGGTCCACATGAGAGTCCACACCGGCGAGAGACCCTACACCTGCATCATCTGCAAAGAATccttcgcgaaaaaaaattcactcaaaCAACATTTGATCCTTCACACCGGCGCTAAGCCCTACGTTTGCGATATTTGTGGCAAAAAATACGCCCAGAAACCAGGTTTGTCCTACCATCGAAAATCACATCCCGGCCCGATTCCATCCTTGCCACCGGTCTTCATTGACCCACTTATTGAAAACCTGCTGAGGCAGGACGACGGAAAAAAGAGCGGGAGACGGAAGAAGAGCGTGCCAGCGAGAAAGTTGAGGACTTCGGAAGAGAGGAGCAAGTCGTTGTCGGTGAAGCAAGACCCAGGGGCAAGTGCGGcggcgacgacgacaacgacgacgacgacggggACGACGACGGAACAACCTTTGAATTTAAAATCCGTGCGTACGAAGCGTACGGCAGGAACGGCGAACATCGAAGTGGAAAAATCGGATTCGGAGAAGAATGTGCCGgcgaaaaagaggaaaataacgCGGAAGAGTGTCCGggcgaagaagaaaacgaagaagaagacgaCTCGGGAGACGAGCAGCGAGTCGGACGACAGCGAGAGCTCGCACGAGGAGTGGCAGAATCCGAACGAGAAATCTCCCAAAGCTGCTGCCAAACCGACGAAACAGCCGCGAGAGCCCAAGCCCGAATTTTACGAATGTGCCACTTGCGAGATGACTTTTGTCGAGCGTCGTCGTTACAGACGCCATCTCGCTAAGCACAACAACACCAAGAGCTTCGAGTGCGACAAGTGCGGCCAAAAGTTCAAATACAACTCCAATCTCAAGAGCCACATCCGACACGTCCACGACGAAGATCCACCGGTTTACAACTGCACCATGTGCGACTTTACCACCAAAGGCCCGTACTATCTCCAAGAACATTTCACTCGGAAACACACCGAGGAGTACAAATACGAGTGCAACATTTGTGGCAAGCATTACAAGAGCGAACGCGATTACAAAGCCCACATGAGCAACCACGAGGACGGGCCACAAATATGCGACATTTGTGGAATATCATACCCCGGCAAAGTCTCGCTTTACTCCCATCGATATTACAAACACACGGAAAAACTCAAGCCGTTCGAATGCACCATTTGTAAGAAGCGTCTCGTCACCGAGAAGAATCTCGAGGCGCATATGCTGCAGCACAATCAGTCGTACGTCTGCGAGCTCTGCGGAATGAAATTTGGCCGGCAGGCCGGTTTATCAAAGCATCGTAAaatccacggggaaaaaactttcctcTGTACCGTTTGCGGACGAGCTTTCGCGAATATGACCACCCAGAGAGTCCACATGATAACGCACTCGGGAGTCAGACCATATTCCTGTGACGTTTGCGGCTCCAGTTACACCCAGCGATCTTCCCTGATGCTTCACTGGAGAAAGAAACATCCCGAGGCCACCGAACCACCGCCTCCTGTCACACTAACCAACAtatctgattttttgaaaCCCAATACAGACTGA
- Protein Sequence
- MSLCEVKIEYDEVNESSYANESDDLIYFNDENDENEENCENDVHGDYSCRRCNILFKTRNMLKSHTKSVHEAIQCYKCQICQKTYNEPAAFDAHIVGEHEIDIAHAHNFLDRLTLYRVSKNEPESAPDSKIIVTTFETKADVLSCSNCDYKFIHRGEYCICDYCGKSYRTPEDLEEHRKFVHFRGKHECKICHRGLASEKNLDEHMANMHVKKKTMKKRKPAVCEACGKMFSDRPKLTVHMRVHTGERPYTCIICKESFAKKNSLKQHLILHTGAKPYVCDICGKKYAQKPGLSYHRKSHPGPIPSLPPVFIDPLIENLLRQDDGKKSGRRKKSVPARKLRTSEERSKSLSVKQDPGASAAATTTTTTTTGTTTEQPLNLKSVRTKRTAGTANIEVEKSDSEKNVPAKKRKITRKSVRAKKKTKKKTTRETSSESDDSESSHEEWQNPNEKSPKAAAKPTKQPREPKPEFYECATCEMTFVERRRYRRHLAKHNNTKSFECDKCGQKFKYNSNLKSHIRHVHDEDPPVYNCTMCDFTTKGPYYLQEHFTRKHTEEYKYECNICGKHYKSERDYKAHMSNHEDGPQICDICGISYPGKVSLYSHRYYKHTEKLKPFECTICKKRLVTEKNLEAHMLQHNQSYVCELCGMKFGRQAGLSKHRKIHGEKTFLCTVCGRAFANMTTQRVHMITHSGVRPYSCDVCGSSYTQRSSLMLHWRKKHPEATEPPPPVTLTNISDFLKPNTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -