Basic Information

Gene Symbol
ARID5B
Assembly
GCA_037043255.1
Location
CM073310.1:1576670-1595628[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.2e-23 7.2e-20 71.3 0.0 2 89 356 441 355 441 0.95

Sequence Information

Coding Sequence
ATGACAGCGGTGCTCATTTTGGAGGTTCGCGACGAAATCGAAACGACAGAGTTACTCGGCGGTGCTTGCTTCAGCCACGGGCCTTACACGTTTTACAAAGCCGTAAGAATCGGCGATGGCCGTGTTTTACGACTCGGTAATTTTTTCCTTACTAAATTGTGGACCGACGCCGATCTCGTCAGTATCGGCGAGTTGCAATTGCTCTGGCTCGACAGTCGCGGCTCCAATCAGCCACTTGCATCCTTGCGACTTTACTTCCTGCCGGAAAACACGCCTGACGGTCGTAGGAGCACCCACGGCGAGGACGAAGTATTGACGATCTCGGAAAAAGTAGTCGTTCGCGTACACGATCTCATAACATGGCTCGCCCCATCGGTGGAATGGTCATGTGGCAGGAAAACACCATTTGCAATGTCACCAAAGTTGTCATCGTCCTCGGAAAAATGTCTTGGGAAGCAGCAGCTCGATGGAGAGTCTCCTCGAGTACTCACAGATCCGGGTATCGATTTCACGCAAGTTGACAAACAACAGAAAGAATTTCAAACGAATCTCAGCGGTgtgaaaaaagaggaagacgAAGAGGTGAAAAAGGAGGAGGAACAGCAacaggagaaggaggaggacgaTTATAATGATGGGGTTGATGATGATGGAAATAGCTCACAAACGAGAGTGATCGTACTCTCGTATCCGAGGTACTGTCGTTATCGCGCCCTTCTACGAAGGCTCGAAGGCACCGAACCCTCGTGGCTCTCCTCATCAATTGCTGCTGCTCTCGGCGGTTTTACAGCACTTCCCGGTACAAAGGTTTTATTCTGTAGAGACACCTTTGACTACCCTGATCTTGAAACGCACGAACTTCTCTGCAATCACTTggCACCAAAATTGAAAGGAAGAccaaggagaaagagaaaaaagcgtaGTGTCTCGCCCGGTGAATCGAGCAACGAGAGCGAGGCATCGGTAGTTTCAACATCGAGAGGATCTGTTTCGAGCTTGAACCTGGCACCTGCGCTGGGACCACCGTCCGGTGTTCGCCGCAGCGAAAGAAACACGAGCGGGGACGAAAAAAGATTTCTTACTGATATCAACAGTTTCATGAGGTCGCGAGGCACGCCAGTCGGAAAAATGCCCTTGCTCGGCTATAGGCAAATCGATCTCTTCCTATTTTATACTAAAGTGCAAAAACTCGGAGGTTACGACTCCGTCAGTGGTGGAAGGCTGTGGAAAAGTATTTACGACGATATTGGTGGAAACGTTGGATCCACGAGCGCCGCAACAATTACCCGGAGACATTACGAAAGGTTGTTGTTACCTTACGAGAGGCATCAACGCGGCGAGGAAACAAAAGTTAGACCGATCTACGGTAGGCGACTCAAATACGCTTGTTTGTCCGGAGATTCGAGTGAATCGAAACCGGAAATTGGAAGGATACCAAGTTCGGAGACGGCATCGCCACTGGAGGCACCGACGACACCTTCGCCTGTTCTTCCGCTCCAGTCAATCGCCGCAGCAGGTTCCTCACCGCCTTTCCTACCGGGCGACAAGCCAAAGACCGAGGGGGGCAAGACGTCGTCATTGCGGAGTGTCCGAGTGAAGCCGGAACGTTTGAAATCGTTAAACACGATAGGATCGAATAATTCAACGAttccgaataaaaatattcaactggCAAGTCCGAGTCCGCCACCGTCGTCGAACGTATCGACGTCATCGAGTCTGAGTACGCCGAGCAGTACACCATCGACGACACCGACGAATATCGTCGGAGTATCCTCTCAAAACGTAATCGAGCGTCAGTCGAGCAGTCCCTTAATATCTCAGCAAGTGCCAACAACGACATCGGGCCCGAGTTTGCCGGTGAGCACGAGCCACTCGACGATGGCGACGACACCGATCGTGACGACGTTAACGCCGCCTCCGGAAAAGGACATGAAAGAGATTAAGCTCGATCCAAAAGCAACCAACATTCTCGCTcagggaaaagaaaatattccgGTATTTGGGGAGAAAGCAATATTTACGGAAAAAGCTCAACCGCCAGCGAAATCTCCTCCGGAGGTGATTGACCTTGAGCTGGAAAACGACTCGAGTCGAGACAAGATCGTAATACCGAGTTtcaagaaacgaaaattggagATTCTTCGAGAGGGCGGTCTCGAAGTGACACCTGTCGAATTGGAAGGACGTTCGAGCATTATCCAAGCAACGATAATTCCGGTGAGCGCAGTATCGgcgacaaaaatcgaaaatccgaGCAGTCCCTCCTTTTCAACCTCCTCGACACCCAATTCTGTACCAAAATTAATATCCGTAACAGTTACTCCAGACATTGGCCATATGTTACCGTCCTCGACCCCCGAACGAGCCAATTCTCGAACGAACCAGCAGCAAAACaaccaaataaataacaatagCAACAACAATACAGCAAACAGTCGAATAATAAACGTCGGAAGTCCAAGTAATTCGAGTCTTTTGCAACTTTATGCAAACGCAACGAGCCAACCGAGCTTGTCGAGATCGCCTCCGGCACTGAATCATCGTTTCGTACCAGCCTCGACAACCAACGAGAGACAAACGCCTCCAAAAGTCACTCAATCCCGTTCGATATTCGCTCAcagtgaaaaaatggtttacgGCAATCCCAAAGATATTCTCATTCCCCAAAATTATCCTTCTTCGCCCCATGTCCCTCCGCCATGCCAGCCGAACCAGCCGAACAAACAGACCAGCATTCTCAACCTTACCCACAAGTCGACCGATCGATCTTTCGTCCGACCGAACCTCGAAATCGTCCGAGTTCCCGTTGTGCCTCGTTCCGCTCCTCTCAACCtcgacatgaaaaattcagtcagCCCAAAAAACACGCTCCACGATACCAACTCAAGGAAAACTTCTTTTCCTTGTTACGGCGGCATGCTCGACGGTCGGACAATGGCCTCGAACAATCTTGAGATCACGCTCGTCAGCCCGAAACGTCGAAATCATCCGCCAACTTCCTCACAAATTCATCAAGTCTCCCCGAGCCCTCCGCCGATATCGAGGCTTCAAAACAGCcccagcaacaacaacaccTCGGCCAACAATCAACGATTCAACCTCAACAACGTCATGGCCAATCAACAGATACAGAGGCGCCATCAAAATGGCAAATTCCCATCGAGGCTGGAGCAAGTTTCTTCGTACATATCGAGAAAAGCTCCGACCGAACAACCACCGATTATTCCAAACGTACCAAATCTTCATAATCTCAACAATCCTCCTCCTTACACGAGCTTGAAAAGCAACTTTTTGTCGTCGCAACAAAAAGACCAAACACAGCGGAAACAGCACGAGGATAACGACGATATAATCgccgaaaaaatcatgagcgaAAGCTCGAATAATCATCACGGAGGATCCAACGACTGTGACAAAAATGCGATCGTCGATGTCGTCGATCCGTCGCCCACGCGGATCGAATCCTCCGGACGAAATGATCCACCGACCACACACCAACATTCCAACGCTTACGTTGGAAAAAACTCACAAAGCTCGCCAGGCTTTCTCGGCCAACTGCCCAACTCGGCAACTAAGTTCCTACCGATGCTCGATCCGCTTTATTATTCGGCATGTTACAACGGCCTTTTTCCACCTCCCATCCCACCGACACCGTCCCCGCAGCCTTACATGTCGCCAGAATTCACCGCTTATTACAAGGAATTGCTCGCCTCGTCTCAGCCCAAATTGGCCATCACGGGACAGCATCAACCCACGGTACCGACCTCCAAGTAG
Protein Sequence
MTAVLILEVRDEIETTELLGGACFSHGPYTFYKAVRIGDGRVLRLGNFFLTKLWTDADLVSIGELQLLWLDSRGSNQPLASLRLYFLPENTPDGRRSTHGEDEVLTISEKVVVRVHDLITWLAPSVEWSCGRKTPFAMSPKLSSSSEKCLGKQQLDGESPRVLTDPGIDFTQVDKQQKEFQTNLSGVKKEEDEEVKKEEEQQQEKEEDDYNDGVDDDGNSSQTRVIVLSYPRYCRYRALLRRLEGTEPSWLSSSIAAALGGFTALPGTKVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSVSPGESSNESEASVVSTSRGSVSSLNLAPALGPPSGVRRSERNTSGDEKRFLTDINSFMRSRGTPVGKMPLLGYRQIDLFLFYTKVQKLGGYDSVSGGRLWKSIYDDIGGNVGSTSAATITRRHYERLLLPYERHQRGEETKVRPIYGRRLKYACLSGDSSESKPEIGRIPSSETASPLEAPTTPSPVLPLQSIAAAGSSPPFLPGDKPKTEGGKTSSLRSVRVKPERLKSLNTIGSNNSTIPNKNIQLASPSPPPSSNVSTSSSLSTPSSTPSTTPTNIVGVSSQNVIERQSSSPLISQQVPTTTSGPSLPVSTSHSTMATTPIVTTLTPPPEKDMKEIKLDPKATNILAQGKENIPVFGEKAIFTEKAQPPAKSPPEVIDLELENDSSRDKIVIPSFKKRKLEILREGGLEVTPVELEGRSSIIQATIIPVSAVSATKIENPSSPSFSTSSTPNSVPKLISVTVTPDIGHMLPSSTPERANSRTNQQQNNQINNNSNNNTANSRIINVGSPSNSSLLQLYANATSQPSLSRSPPALNHRFVPASTTNERQTPPKVTQSRSIFAHSEKMVYGNPKDILIPQNYPSSPHVPPPCQPNQPNKQTSILNLTHKSTDRSFVRPNLEIVRVPVVPRSAPLNLDMKNSVSPKNTLHDTNSRKTSFPCYGGMLDGRTMASNNLEITLVSPKRRNHPPTSSQIHQVSPSPPPISRLQNSPSNNNTSANNQRFNLNNVMANQQIQRRHQNGKFPSRLEQVSSYISRKAPTEQPPIIPNVPNLHNLNNPPPYTSLKSNFLSSQQKDQTQRKQHEDNDDIIAEKIMSESSNNHHGGSNDCDKNAIVDVVDPSPTRIESSGRNDPPTTHQHSNAYVGKNSQSSPGFLGQLPNSATKFLPMLDPLYYSACYNGLFPPPIPPTPSPQPYMSPEFTAYYKELLASSQPKLAITGQHQPTVPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00829267;
90% Identity
iTF_00829267;
80% Identity
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