Dlon003235.1
Basic Information
- Insect
- Diachasmimorpha longicaudata
- Gene Symbol
- -
- Assembly
- GCA_034640455.1
- Location
- CM067948.1:8896001-8898232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00047 0.038 14.5 2.3 1 20 139 158 139 161 0.96 2 13 0.0041 0.33 11.5 1.2 1 23 167 190 167 190 0.92 3 13 2.6e-06 0.00021 21.6 0.9 1 23 196 218 196 218 0.98 4 13 8e-06 0.00065 20.1 0.2 1 23 321 343 321 343 0.98 5 13 0.0002 0.016 15.7 0.5 2 21 351 370 350 371 0.93 6 13 0.00025 0.02 15.4 2.6 1 20 391 410 391 413 0.92 7 13 0.0037 0.3 11.7 0.4 1 23 418 441 418 441 0.95 8 13 9.8e-07 7.9e-05 22.9 2.0 1 23 447 469 447 469 0.99 9 13 0.0001 0.0084 16.6 4.2 1 23 476 498 476 498 0.99 10 13 0.00029 0.023 15.2 0.4 3 23 506 526 504 526 0.97 11 13 0.00033 0.027 15.0 0.2 1 23 532 555 532 555 0.96 12 13 0.53 42 4.9 0.1 1 23 569 591 569 591 0.92 13 13 0.0037 0.29 11.7 0.0 2 23 721 742 720 742 0.96
Sequence Information
- Coding Sequence
- ATGGAAACATCGGACAATGAGCAGTACATAACGTACTCTCTGTCATCTGTCCATGACATTCAGCAAACAATAATTTCCCACGAGGAGGTGTGCGAGCCCACGGTATCAGTTCTCTCCGAGACGCATGCAGAGATTCTCTGTGAAAAATCCTCCTCTGACGACGAGAATTCCATCGTCTACCCAATATACATAAAGCAAGAGGAAACTCCGCAGTACACATCTGGGGATGACGAGTCGATGGCAGTGGAGGCACTTCGGCAGTTGGGGGGAATGTACCCCACCTTTGACGAAAAAACAAACGCAACAAATTCTGAGATGGACGACAATCTGTCCCCTGATGATAAAATCACGAAGGAGACGGCTAGCCCGACGAAGAAAGTGCCAGCGTCGTCAGGGGGcaagaattttggaaaatactcGTGTCAAACGTGTGGCGAGAAGTTCGACAGGAAACTAGATCTGAATAACCATATGGTTTGCCATCAGGTGGATCGTCCCCACGCCTGCAGAACTTGTGGCAATCTCTTTCGCTCGAAAGCTAGCCTGCAAACTCACATAACTCAAGTACATAATCAAGAGAAGTCCCACAAGTGTACAATATGTGGGGCAGATTTTCAAAGGCCATCGTCACTGTCCAATCACATGAAAATTCACACGTACGTCGCTGGCCGAGCATTGGTATCTCAATCAGAAAACTTATCGGAGTCTCCAACATGTTCAGGGCAGGCAGTTGAAAATTATCAAGTGACCCAGGTGAATTGGCAGAGTTACACATTCCAGACTGATCAGAATGAACTGGATCAAGAGAAAGTCGAACTGCAGGAGTTTACCGTACTGCCTAATGGTGAGGTCGCTCAGTTTGAGTATCCCCAGACCTATAATCTTAACCTGGAGGGCCTCCCCTTTGATCAGAAAAAAGGCCAGTTCCTGACAGTCGAAGTGGAGCATAAGCCAGTGCAATTCACTTGCAGCCAATGTGGCATAAGTTTTACGAGAGCAACGGCCCTAGCTTCGcacgaaaaaatccacaaagCCTGGACGATGCCAATAGAATGTGAATACTGTGACAAACAATTTCAGGACAGCAATCATTTGGCGTCCCACCAGACAACATGCGCCAAGAAATTGATGCTGAACAACGGTGACAGCGCCAATGGCAAGTGGTCCAAACACGCCTGTTCTGAATGCGGTAAAAAATTCACGACTAAGCAAAAGATGTTTCGACATCAGTGGATTCATCGGAAGAAGACGCACTCTTGTGAGGTCTGTGGGGCACAATTTGAGAAGCAGAATCAGCTCGATGAGCACAGGTTGTCGGCACATCCTGGTATTTCTCCGTTCACGTGTTCAGAATGTGGAAAGTGTTTTGTGTCGAGACAGGGCCTGTGGGAGCACACCAGAACCCACGCCGAGGGTCCAGCACTCTTCCAATGTGACACATGCTCGAAGACGTTCTCATCGAGACAGGGCTATCTGATACACCACAGAACTCACACCGGAGAGCGGCCCTACGGCTGTAAATTCTGCTGGAAGGCCTTCAGAGACGGTGGAACTTTGAGAAAACACGAGAGAATTCACACTGGAGAGCGGCCACACGTGTGCCCTCTGTGCTCAAGAGCATTCAATCAGAAGGTAGTGCTGAGGGAGCACGTCCGGTGGGTTCACGCTGCTGGAAAAAACGAGACTGAAGTCGTAGGACCGCCCTTCCCCTGTCCCCTCTGTGGGGCCTTGAATCAGGACAGGGACGAGCTGTGCGCCCACATTGTCAAACATTCAGATCAGATGATTGCCGAGGCCAAGGCCAAGAGTGTCCTGGATCCTCTTAATACcaaaagtaataataataacaagaaGAAGGCAAGAGGCAAGGGCAAGCAGAAGCTTACCAAGATAGAGGATGGAGAGACCCTTCTGCTGGTTGCTGCTGAGAAAACTGATCAACAGGAGATGAAGGAAGTTGTTGTTGAGGAGCATATCAATAATGTACTGAGGGTTCAGTTTGTTGATGATAAAGAGAGCACTCTGCAGATCATTAGTAAGGAGAATGAAGCACTCCCTGTTCTGGCTATTCCCAATGACGGTGAGGAGTTTGGGGGAGAAATTGAGACAATTGACGATGGAGTTTATCAAGAGAGTGATGATGAGAAGGAACTGGAACTCATCTGTGGAATATGTGGAGATGAATTTGGAGATAAGAATAATCTTATGGAGCAtgtgaaaattcatatttaa
- Protein Sequence
- METSDNEQYITYSLSSVHDIQQTIISHEEVCEPTVSVLSETHAEILCEKSSSDDENSIVYPIYIKQEETPQYTSGDDESMAVEALRQLGGMYPTFDEKTNATNSEMDDNLSPDDKITKETASPTKKVPASSGGKNFGKYSCQTCGEKFDRKLDLNNHMVCHQVDRPHACRTCGNLFRSKASLQTHITQVHNQEKSHKCTICGADFQRPSSLSNHMKIHTYVAGRALVSQSENLSESPTCSGQAVENYQVTQVNWQSYTFQTDQNELDQEKVELQEFTVLPNGEVAQFEYPQTYNLNLEGLPFDQKKGQFLTVEVEHKPVQFTCSQCGISFTRATALASHEKIHKAWTMPIECEYCDKQFQDSNHLASHQTTCAKKLMLNNGDSANGKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGAQFEKQNQLDEHRLSAHPGISPFTCSECGKCFVSRQGLWEHTRTHAEGPALFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVVGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKSVLDPLNTKSNNNNKKKARGKGKQKLTKIEDGETLLLVAAEKTDQQEMKEVVVEEHINNVLRVQFVDDKESTLQIISKENEALPVLAIPNDGEEFGGEIETIDDGVYQESDDEKELELICGICGDEFGDKNNLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273264;
- 90% Identity
- -
- 80% Identity
- -