Dall005557.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:1373267-1376109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.43 32 4.7 0.1 3 23 113 134 111 134 0.93 2 11 0.0097 0.73 9.8 2.7 2 23 139 161 138 161 0.93 3 11 6.2 4.7e+02 1.0 0.1 2 23 241 262 241 262 0.85 4 11 0.083 6.2 6.9 1.0 3 23 269 290 267 290 0.94 5 11 0.68 52 4.0 0.7 3 20 302 319 300 320 0.92 6 11 0.028 2.1 8.4 3.3 2 23 327 349 326 350 0.95 7 11 7.9e-06 0.0006 19.5 0.9 2 23 363 384 362 384 0.97 8 11 0.0078 0.59 10.1 1.3 2 23 393 415 392 416 0.92 9 11 1.6e-05 0.0012 18.6 0.6 1 23 421 443 421 443 0.98 10 11 0.26 19 5.4 0.0 3 23 448 469 446 469 0.89 11 11 0.054 4.1 7.5 1.4 1 23 479 501 479 501 0.95
Sequence Information
- Coding Sequence
- ATGGATCTAAACATCGCTGAAAACGTTTGTAGATTATGTGCTAATAAGGGAAAACAATATCATCCCATTTTCGATTCGAAAACCAATCCAATAGCTGAGAAGATCAACAATTGTTTACCAATAGAGATTAGAGAAGACGATAGACTTCCATCTCACATTTGCCCTGGATGTCTCGAAGCTCTGGACATAAGCGATAAACTGAGAGCCCAATCTCTGGTAGCTGATGAGATATTGAGGCAGCAATTGAAAGTTGTCTTGATCGACAAAATTAAACAGGAGAAAGATGTGGATACGGATGATGAATCGCAGCCGATGGATACGACTGAACGATTGTTCTGTGGTATATGTGAGATCAATTTTGATGGCATGACTGAGTTCGATGATCACATGAAGGCATCGCACTCTTCACAATGGATTTGTGATCTTTGTCATGAAGATTGCAAGACATCGGAGGATCTGCTCCGACATAAATACAAAGACCATTATGACAGTATTGATCAGAATGAAGAGGCTGACATTGATCTTCCCAAAGATGATGATGTTCATCATCCTCCAGAAACTACTGTTGATCATTCCCAAGAGGCCGAGGATTCCGGTGGCTCAGGAAATACTTTAGGCCATTATGTCGATGTGAAGGAATTCATCAAACCCAAAACGGAAGATCAACTGAGTTTTCAGAGCTCTCTGGTGCCCTCGCAACCCATAGAGAGGAGGAATGGCGTTTGTAGTATCTGTAAAGTGCCAATTTCCACTGACAATCTAATGTCCCTCCACGCAAAGTTGCACAGGCCCCTGCAGATCGCTTGTTCCACCTGCTGTCTCAAATTCCCCACCCCCTACGATCTCGTTACTCACAAGCAAAGCACGCACAAAGTGTATGTAGATCAGAAGATGAAGTGGTTCTGTGAGAAGTGCGAGAAATTCGCAACGAGTGATCAGTTCCTGAGACGACACAAGCTCTGCAAAAAGATACAGCTGATGTGCAAATATTGCACTCAGGAGTTCTCCCTAGAATCTGAATTACGATTTCACCAAAAAAAAAATCATCACGACGATGTGATGAAGGATCCAGAGCCTGAGACAATGGAATGTGAGACGTGTGGGAGGatttttgaagataaaaataattataagtaTCACCTTCGAAAACATCGCGAGACAAATCATGGAGCAATCCCGTGCTCATCATGCGGGAAGAAATTCGCAGATGCTCGGGGATTAAAATGCCATGTCAACGTTATGCATCACGGCCACTGGAAATACATATGCGATATTTGTTTCAAGAGCTTTCCTGGCCCGAAAAAATTGGAAATGCATAGGAGAAAACATGTGAATCAGATGTGTCTAGAGTGCAGCGCGGCATTCGAAAATGCTGAGACCCTGGGCGCCCACTCGTTGCAGCAGCACAGTACGTCTAGATCATCtgcggaaaaatatttttgtaatttttgtgGCAGTAAGTTCCAGGAATTGGAGCTCTTGAGAGATCACGAGAAGTTTCATGCTCGAGCACAATCCCCTACCATACGATATGGCGTGTTGGTAGAAGAGAAATCCCCGTCATGA
- Protein Sequence
- MDLNIAENVCRLCANKGKQYHPIFDSKTNPIAEKINNCLPIEIREDDRLPSHICPGCLEALDISDKLRAQSLVADEILRQQLKVVLIDKIKQEKDVDTDDESQPMDTTERLFCGICEINFDGMTEFDDHMKASHSSQWICDLCHEDCKTSEDLLRHKYKDHYDSIDQNEEADIDLPKDDDVHHPPETTVDHSQEAEDSGGSGNTLGHYVDVKEFIKPKTEDQLSFQSSLVPSQPIERRNGVCSICKVPISTDNLMSLHAKLHRPLQIACSTCCLKFPTPYDLVTHKQSTHKVYVDQKMKWFCEKCEKFATSDQFLRRHKLCKKIQLMCKYCTQEFSLESELRFHQKKNHHDDVMKDPEPETMECETCGRIFEDKNNYKYHLRKHRETNHGAIPCSSCGKKFADARGLKCHVNVMHHGHWKYICDICFKSFPGPKKLEMHRRKHVNQMCLECSAAFENAETLGAHSLQQHSTSRSSAEKYFCNFCGSKFQELELLRDHEKFHARAQSPTIRYGVLVEEKSPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -