Basic Information

Insect: Diachasma alloeum
Gene Symbol: -
Assembly: GCA_001412515.3
Location: NW:33125-41260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1 79 3.4 0.2 3 20 250 267 250 269 0.87

2 12 0.0037 0.28 11.1 0.1 1 23 275 298 275 298 0.91

3 12 3.6e-05 0.0027 17.5 3.0 2 23 311 333 310 333 0.96

4 12 0.15 11 6.1 0.3 3 23 346 366 346 366 0.95

5 12 5.6e-08 4.2e-06 26.3 1.5 2 23 408 429 407 429 0.97

6 12 0.0029 0.22 11.5 0.8 1 23 434 457 434 457 0.94

7 12 0.076 5.8 7.0 1.5 2 23 525 546 525 546 0.97

8 12 4e-05 0.0031 17.3 0.9 1 23 555 577 555 577 0.95

9 12 0.064 4.8 7.3 5.0 1 21 600 620 600 621 0.94

10 12 0.0013 0.096 12.6 0.6 1 23 626 648 626 648 0.98

11 12 0.1 7.7 6.6 0.0 1 23 711 734 711 734 0.97

12 12 6.2 4.7e+02 1.0 0.5 12 23 738 750 737 750 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1	79	3.4	0.2	3	20	250	267	250	269	0.87
2	12	0.0037	0.28	11.1	0.1	1	23	275	298	275	298	0.91
3	12	3.6e-05	0.0027	17.5	3.0	2	23	311	333	310	333	0.96
4	12	0.15	11	6.1	0.3	3	23	346	366	346	366	0.95
5	12	5.6e-08	4.2e-06	26.3	1.5	2	23	408	429	407	429	0.97
6	12	0.0029	0.22	11.5	0.8	1	23	434	457	434	457	0.94
7	12	0.076	5.8	7.0	1.5	2	23	525	546	525	546	0.97
8	12	4e-05	0.0031	17.3	0.9	1	23	555	577	555	577	0.95
9	12	0.064	4.8	7.3	5.0	1	21	600	620	600	621	0.94
10	12	0.0013	0.096	12.6	0.6	1	23	626	648	626	648	0.98
11	12	0.1	7.7	6.6	0.0	1	23	711	734	711	734	0.97
12	12	6.2	4.7e+02	1.0	0.5	12	23	738	750	737	750	0.90

Sequence Information

Coding Sequence: ATGTCTTTGGAGAGTTTATCGGATAATAGTTGCAGGCTGTGTGCCGAAGAGAAGATGGAGATGTTTCAGATATTTGGTGATGAGGGGAAACAGAGAAGAGTAGCCCAAAAACTGAGGGTTTGTTTACCTGTTATGGTGTACAAGACTGATCCCCTGCCCAAAAAGATATGTCAATTCTGTGCTGCAAGGTTGGACGATGTTTTTGAGTTCAGGGAATACTGTCTAAATGTGTACCGGAGAATGCATGTGAAGTTGTTGGCGAGGAAGCATATGAACTCTGTGAAAATATTTCTGGATGCTATGGCAAACTCACCAGATCCTTGTCAGGCACAATTGTGTATGCTAAAGCCTCGAGCACCACCGCCGCTGGTACCCTTGCCAGCATCACTGCCATTACCTAGTCCCGTTACTCCAGTTGATCAGCAAAACATCAGAGAGACTACTGCAACTCTCGAACCATTACCAGACCTTCCCTGTGAAGTTCAGATTAAAGAAGAACTGTCTCCGGCCACCAAAGCTGAGGTTGTCCCCGTCGATGTCAATGATGAATGTTTAGATGAAAATATTGAGGTGAATTATCAAGGAAATGACAACACCGATAGTGATGGAGTCGAGACAAATGGAACGGAGTCTGATCTGAAAGGGGAAAAGAAGACAAGCATTTTGGAACAAGTGCTCACTGGGAATCTAACTATCAACGATTGTAAAGAACTGTCCCCAACGAGCAAATTGAGCTCCAAATGGTGGTGTTCACCATGCAATAGTTATTACAGaaCGAAAGAAAGTTTAGTGAAACACATAACACTTTATTGCCCTCGTAAATATTCCTGTGGCAAATGCTCCCTCGTATTTCCAACTGTTGAAGATTTGGCAAAGCACGAGGGCTCTGATCATTTGAAAGTAACCCTTGACTTTGAGGAATCAGTGAAACAATGTCATGGTTGCGATCGTGAGTTTGTAAGTTGGGAAATGCTAAAGCATCATCGTTTGCGGGATCATCTTGCTAGTTCGATCGAACTTGGAACTGACACATGGTGCTCGCTGTGTAATAGATTTTTCCCAAATATCGAGCTATATCGGGGCCACGCTCAACTCCACGAATCTGGGGACTTTCTGGAAAAAATACTAGAGCCTCCAGAAGAGATAGATAATTCGCCAAAAGCTCAGGAAGACTTGGAGAGCGTGAAACGCGAGCATTTCATCAAGAGCATCAGATCACTAACCTGCCCCACCTGTGGAAAGGTCTGCACCCAACAGAGTGCTCTATCTAACCATATGCGCACTCACGAACCAAAAAAACACAAATGCGAGGAGTGTGGTCGATCGTTTGGACTGCTGATACGTCTCGAGACTCATAAAATGAGTGAACATAATCAGAAGAGTAGAATTTCACCGGCGTTGACGAGTGTCGAGCAAGAGGAGGCTTTGAATGCTGAAAGAGAGGCCAGGGAGGCAAGAGAAGCTAAATTACGGAGTCGACCATATAGTGAGatATTAGATCCAGAGGGGGTCGTACTTGATGATCAACCTCCTGCAAAAAGACAAGCGACTAACTCTTCGAAGAATGTTGCACGATGTGGAATTTGTGAACAATGGTTCACTGATCATACAACGATGCTCAATCATTTGCAAACACACTCAGATAATTTAACTGCTAAGAATTTCACATGTGCCGTATGTAGGAAAAGTTTCAAGGAGAAATGGCAACTACAAAGACACGAGGTCTCTCATAAGCGAGTGAAAAATTTAACCCCCGAGGAGGAGCCCCAAGATAAAGTGCACATTGTTGATAAAACATTTCATTGCCAAAAATGTAATAAGATATTCTTCAAAGAATTTTCACTTGTGACTCATCAGTGTATGAACCAGAAGAGATTTAAATGTCCAAAGTGCCTGACTTTCTTCGGGACCTGGCAGGCGAGAGCTTCACATATGAGGTTACATTCACCCTCAGCAAAGGTATCATCGCAAAAAGAACCTGTCGATGATGCTAATGACCCCACCGTAGAGTCTCCATCAGACACCTCCTCAGGTACCTCCGTCCCATTTCTGGAGCCCAAAGTCGAGATTAAAGAGGTGGAAAATCCCACAGCCCCCGTAAAAAGAACTCTAATCAGAACAGCGAATGGATATCGTTGTGGCGTATGCCAATCGCCATTTGTCCTTCGTGAATTGGCTGTGGCTCACCTGAGATCAGCCCATCCAAGAATCACGCAGTACACATTTAGTCATCACATCAAAACCGATCATCCTAATGAGTCTGAGAAATAA
Protein Sequence: MSLESLSDNSCRLCAEEKMEMFQIFGDEGKQRRVAQKLRVCLPVMVYKTDPLPKKICQFCAARLDDVFEFREYCLNVYRRMHVKLLARKHMNSVKIFLDAMANSPDPCQAQLCMLKPRAPPPLVPLPASLPLPSPVTPVDQQNIRETTATLEPLPDLPCEVQIKEELSPATKAEVVPVDVNDECLDENIEVNYQGNDNTDSDGVETNGTESDLKGEKKTSILEQVLTGNLTINDCKELSPTSKLSSKWWCSPCNSYYRTKESLVKHITLYCPRKYSCGKCSLVFPTVEDLAKHEGSDHLKVTLDFEESVKQCHGCDREFVSWEMLKHHRLRDHLASSIELGTDTWCSLCNRFFPNIELYRGHAQLHESGDFLEKILEPPEEIDNSPKAQEDLESVKREHFIKSIRSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEECGRSFGLLIRLETHKMSEHNQKSRISPALTSVEQEEALNAEREAREAREAKLRSRPYSEILDPEGVVLDDQPPAKRQATNSSKNVARCGICEQWFTDHTTMLNHLQTHSDNLTAKNFTCAVCRKSFKEKWQLQRHEVSHKRVKNLTPEEEPQDKVHIVDKTFHCQKCNKIFFKEFSLVTHQCMNQKRFKCPKCLTFFGTWQARASHMRLHSPSAKVSSQKEPVDDANDPTVESPSDTSSGTSVPFLEPKVEIKEVENPTAPVKRTLIRTANGYRCGVCQSPFVLRELAVAHLRSAHPRITQYTFSHHIKTDHPNESEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00728860;
90% Identity: iTF_00439014;
80% Identity: -