Basic Information

Insect: Diachasma alloeum
Gene Symbol: prdm10
Assembly: GCA_001412515.3
Location: NW:4890908-4897782[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.5e-07 1.2e-05 24.9 0.3 1 23 535 557 535 557 0.98

2 13 0.0016 0.12 12.3 1.9 1 23 565 588 565 588 0.97

3 13 0.013 0.98 9.4 0.2 1 23 605 627 605 627 0.93

4 13 0.034 2.6 8.1 6.5 1 23 640 662 640 662 0.97

5 13 0.00065 0.049 13.5 3.9 1 23 685 707 685 707 0.97

6 13 0.0076 0.58 10.2 2.5 2 23 716 737 715 737 0.96

7 13 0.00068 0.052 13.5 0.2 1 23 744 766 744 766 0.98

8 13 0.00017 0.013 15.3 3.6 1 23 773 795 773 796 0.95

9 13 0.0027 0.2 11.6 3.0 1 23 801 823 801 823 0.98

10 13 0.00015 0.011 15.5 4.4 1 23 829 852 829 852 0.96

11 13 0.0012 0.092 12.7 1.7 1 23 897 920 897 920 0.97

12 13 9.4e-05 0.0071 16.2 2.0 1 23 942 965 942 965 0.95

13 13 0.0028 0.21 11.6 3.4 3 23 999 1020 999 1020 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.5e-07	1.2e-05	24.9	0.3	1	23	535	557	535	557	0.98
2	13	0.0016	0.12	12.3	1.9	1	23	565	588	565	588	0.97
3	13	0.013	0.98	9.4	0.2	1	23	605	627	605	627	0.93
4	13	0.034	2.6	8.1	6.5	1	23	640	662	640	662	0.97
5	13	0.00065	0.049	13.5	3.9	1	23	685	707	685	707	0.97
6	13	0.0076	0.58	10.2	2.5	2	23	716	737	715	737	0.96
7	13	0.00068	0.052	13.5	0.2	1	23	744	766	744	766	0.98
8	13	0.00017	0.013	15.3	3.6	1	23	773	795	773	796	0.95
9	13	0.0027	0.2	11.6	3.0	1	23	801	823	801	823	0.98
10	13	0.00015	0.011	15.5	4.4	1	23	829	852	829	852	0.96
11	13	0.0012	0.092	12.7	1.7	1	23	897	920	897	920	0.97
12	13	9.4e-05	0.0071	16.2	2.0	1	23	942	965	942	965	0.95
13	13	0.0028	0.21	11.6	3.4	3	23	999	1020	999	1020	0.98

Sequence Information

Coding Sequence: ATGGATGATAGGGGCCCTCATGAGGGGGCCCCTGTAGGACCCCTGGAGATTCCCCTGCTCGACAAAACCCGCGATCTCCCCGAGATATGGACGACAAATCCCACGACTTCCATCGACCAACGAAAAAACCCCAATCGCTTGCTCTTCCTCACTGTCGAGTTCGCCGAGGACCAATCCAAGGACTTCTCCAGGATGTTTCCATACGAGCAGGTCTCATTCTCCCCAAGAGCCACATCGCCACTCTCTGATTTTGAGCATCGAGTCAGTCCACTGGACCCCAACATGAGCTCAACAGCTAGATACTCACCCACACCTGTCCAACTGCCTTCACTACCCTTTCAAAATTCAGTGGTTGTGCTGCAGAGTCCACCTTCTCCACTGATGATACCTGCTGAGAGCAATCAACGGGCTAATATCAATTTTATCGAGGCTCAGGGTAACACTGCGAACATCGAGGAGGGGGAGGCTGACAGTGTCCCGGATTTTGTCGGTGGGGGAAGTCAACAGGGAATCGCTGCTGATGtcaatggagaattaattcTGATGCAAGGAACAAGTGCCGAGCTGGAGAATTCGCCAGCCCCTCTCCTCCTCTCGGGCCTCCCGGGCACGGAATTCGCGTTAACCCGCGACTTCCTAGTGATGAACGACGACCAATTAACCGTAATGAACTCCCTCCGCCCCCAGCCCACCGACGACCCCGCGGTCGTCCCGGAGCTCCCGGCCCTCCCCGTCCCCGAAAAGGACCTCCTCCCCCCCTCGATAATCTACCCTCCCCTCCTCCCCAAGAACCCGCTCTCGGCGCCGCTAGGAGATCTCCCCCTGACCCCCGAAAACCGAAGTACAAACTCCAAAAGACAAATAACTGATAAAAAAACCTACTGGTGCGATGACTGCGACACAATTTCCTTAAAGGACGGTGAGTGCACCTGTCACGATGTGCGAACGATCGCTGACCAGCCGGTGCCCTCTCGCGCAGTGGCCACCCTGCCGGGTTCCTACCTCTCCCTCGCGAAATTAAGCGACTCCCCGAAAGAAACTTACGGAGTTTTCGCGAAAAGAAACATCTGCCGACGAACGCAATTCGGTCCGATCGAGGGTGTGCCCTGCGAATATGACGGCAAGGGTTTCAGCCCAGACGCCCTCCCCCTCCTGTACGAAACCGAGGGCGGAGAGCTGATAAAAATCGACGTATCAAACGAGCACTCCTCCAACTGGATGCGTTTCGTGCGCCCCGCGCAGACCCACAAAGAGCAAAACCTGATAATTTCCCAGCAGAAGGACGGGATAATCTTCCTAACTACGCGCAACATATCCCCCCGAGAGGAGCTGCGAGCAGGTCCCAGTCCCGACTACGCAGCTAGACGAAATCTCCCTCTCCTGGAGGACCCGAAGACCCAGCAGTTCAAGTCAGGAGACCTCGAGAGCTTCTCCTGCCTGGACTCGGCCTTCGATAATTCACCACTCGATCACTCTATCCATTCCGACCTCCTGGATCCAATCCTCAAGCCCACCGCAGACCCCCAAGACCAAGAGCAGGGCAAACGACCAAGAATAGGCAAGACCAAGCACCTGAAGACGATGGACGAGCAGTCCCTCCCATACAGCTGTCCTCAATGCCCAAAAGCCTTTCCTCGAAACGATTCCTTGAAGAAACACTTGCTGTCGCACTCGGGCTTGGAGAGCACGGCCTACGAGTGTCCGACCTGCGGCGAGAACTTTCTCCACTCGTACAACCGCAGCCGACACATCAAAATATTCCACAGTGACGACACAAAGGAAAAGGAAAACTCCCGAAAGAATTCCTCAGAATACAAATGCCCAAAGTGCAGTATAATCTTCATGAAGGCATCTCTTCTCGATCTCCACAGTGAGCTGCACAATCAAAATAACAACGAATCAGGAGACTCGAAGACCCACCGCTGTCCTCAATGCAAACATGACTCCAAGACCCACTCAGAACTGATAAAACACGTGTCAAAGCACGGCCACAAACCCCAGCATAAGAAGCAGAAGCAGCAGTTGACGAAAACATCGAAAGTCTTGTCATCCCACAAATGTACGATGTGTTACAAGCGTTTTGCCACTAAAGTGCGCCTCCAACAGCACTACCTGGTGCACGGCGCCGAGGACCAAAAGCCACTGCCATGCAACGTATGCTTCAAGCGATTTATGAACAACTCAGCATTGTCCTGTCACCTGAAGACCCACCGCGAGGACAAGCAGACATTCGAGTGTCCCATGTGTCGTAAACTATTCGATCAGGTTCTCCAACTAAAGGATCACATAGAGACGCACAGGAACGAGGACAAGACGTTCAGCTGTCCTCACTGTCCTCGAATGTTCACCAAATACTCGGTAATAAGAAAGCACATAAGGGCGCATCACTGCGAACGCAAGCACAAGTGTCAATTCTGCGTCAAGCGTTTTCCAACAATCGATAAACTGCGAATGCATCTGCTGAGGCACTCCGATCACAGACAGTTTCATTGCGCTAATTGTGAGAAGCAGTTCAAGAGGAAGGACAAGCTCAAAGAGCACATGACGAGAATGCACAATTCAGAGAGAATGGAGAGCTCTAAAGTGTCGAATATGGCCACTGATAACGATAATTCAGGGCTTCAACAGGGTAATCAAGCTAAGAAATTCATACCAAAGGTCAATCCCACGGATTACAACAGATTTGTGTACAAGTGTCACCAGTGTCTGGTGGGCTTCAAGCGCAGGGGAATGCTTGTTAATCATCTTGCTAAGCGTCATCCGGAGGTGTCACCGGAATCGATACCCGAGTTGAATTTGCCGATTTTCAGACAGACGAGGGATTACTACTGTCAGTATTGCGATAAGGTTTACAAGAGCAGCTCCAAGAGGAAGGCGCACATCGTGAAGAATCATCCGGGCGCTGCTCTGCCCCCCAGCAACAGGCAGAAGGAGATGCTGGGGGACTTGACGTACAGTCAAGCTGCAGGAAGTGTGACAACCACTCCGCAGGGCTGTCAGTGGTGTCACAAGCAGTACGCTAGCAAGGCGAAATTGCTGCAGCACCAGAGGAAGAAGCACTCTACCCTCATGGAGCCTGCTGACCAGGTACCGAGACCCAGGAATCGACCGCAGGCGCAGAGTCAAGTGCAACAGGATCTCATCGACAATAACTTTGTTAATAATAACTTCGAGTTCATTGAAATAGCTCCGGTGTGTGATATCGGTGAGTTCAGATTTAAACCGAGGATTATTAAACTCAGTAATGATGTTGATTTGATTGATATTGAGGGGGGCATTGATCCATTGGTAGATCAACAATTTGTGCGTATGCGCGACATACGTTGA
Protein Sequence: MDDRGPHEGAPVGPLEIPLLDKTRDLPEIWTTNPTTSIDQRKNPNRLLFLTVEFAEDQSKDFSRMFPYEQVSFSPRATSPLSDFEHRVSPLDPNMSSTARYSPTPVQLPSLPFQNSVVVLQSPPSPLMIPAESNQRANINFIEAQGNTANIEEGEADSVPDFVGGGSQQGIAADVNGELILMQGTSAELENSPAPLLLSGLPGTEFALTRDFLVMNDDQLTVMNSLRPQPTDDPAVVPELPALPVPEKDLLPPSIIYPPLLPKNPLSAPLGDLPLTPENRSTNSKRQITDKKTYWCDDCDTISLKDGECTCHDVRTIADQPVPSRAVATLPGSYLSLAKLSDSPKETYGVFAKRNICRRTQFGPIEGVPCEYDGKGFSPDALPLLYETEGGELIKIDVSNEHSSNWMRFVRPAQTHKEQNLIISQQKDGIIFLTTRNISPREELRAGPSPDYAARRNLPLLEDPKTQQFKSGDLESFSCLDSAFDNSPLDHSIHSDLLDPILKPTADPQDQEQGKRPRIGKTKHLKTMDEQSLPYSCPQCPKAFPRNDSLKKHLLSHSGLESTAYECPTCGENFLHSYNRSRHIKIFHSDDTKEKENSRKNSSEYKCPKCSIIFMKASLLDLHSELHNQNNNESGDSKTHRCPQCKHDSKTHSELIKHVSKHGHKPQHKKQKQQLTKTSKVLSSHKCTMCYKRFATKVRLQQHYLVHGAEDQKPLPCNVCFKRFMNNSALSCHLKTHREDKQTFECPMCRKLFDQVLQLKDHIETHRNEDKTFSCPHCPRMFTKYSVIRKHIRAHHCERKHKCQFCVKRFPTIDKLRMHLLRHSDHRQFHCANCEKQFKRKDKLKEHMTRMHNSERMESSKVSNMATDNDNSGLQQGNQAKKFIPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPEVSPESIPELNLPIFRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKEMLGDLTYSQAAGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADQVPRPRNRPQAQSQVQQDLIDNNFVNNNFEFIEIAPVCDIGEFRFKPRIIKLSNDVDLIDIEGGIDPLVDQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438971;
90% Identity: iTF_01274015;
80% Identity: -