Dall005528.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:1380706-1384257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 91 3.2 0.0 3 23 113 134 111 134 0.92 2 15 0.0072 0.55 10.2 3.2 2 23 139 161 138 161 0.93 3 15 0.09 6.8 6.8 0.0 2 23 241 262 240 262 0.96 4 15 0.00032 0.024 14.5 0.2 2 23 268 290 267 290 0.96 5 15 1.9 1.4e+02 2.6 1.2 3 20 302 319 300 320 0.92 6 15 8.2e-05 0.0062 16.4 3.9 2 23 327 349 326 349 0.97 7 15 5.1e-06 0.00039 20.1 1.3 1 23 362 384 362 384 0.98 8 15 0.001 0.079 12.9 1.2 1 23 392 415 392 415 0.93 9 15 3.1e-06 0.00024 20.8 2.9 1 23 421 443 421 443 0.98 10 15 0.012 0.9 9.6 0.2 2 23 447 469 446 469 0.94 11 15 0.0025 0.19 11.7 1.9 1 23 479 501 479 501 0.97 12 15 0.0016 0.12 12.3 3.2 1 23 507 529 507 529 0.96 13 15 5.2e-06 0.00039 20.1 4.3 1 23 534 556 534 556 0.97 14 15 3.7e-05 0.0028 17.4 1.9 1 23 564 586 564 586 0.98 15 15 0.0043 0.33 10.9 1.2 1 23 592 615 592 615 0.95
Sequence Information
- Coding Sequence
- ATGGATCTAAACATCGCTGAAAACGTTTGTAGATTATGTGCTAATAATGGAAAACAATACCATCCCATTTTCGATTCGAAAGCCAATCCAATAGCTGGGAAGATCAACAATTGTTTACCAATAGAGATTAGAGAAGACGATAAACTTCCATCTCACATTTGCCCTGAATGTCTCGAAGCTCTGGACATAAGCGATAAACTGAGAGCCCAATCTCTGGTAGCTGATGAGATATTGAGGCAGCAATTGAGAGTTGTCTTGATCGACAAAATTAAACAGGAGAAAGATGTGGATACGGATGATGAATCGCAGCCGATGGATACGACTGAACGATTGTTCTGTGGTATATGTGAGATCAATTTTGATGGCATGCCTGAGTTCGATGATCACATGAAGGCATCACACTCTTCACAATGGATTTGTAATCTTTGTCATGAAGATTGCAAGACATCGGATGATCTGCTCCGACATAAATATAAAGACCATTATGACAGTATTGATCAGAATGAAGGGGCTGACATTGATCTTTCCAAAGATGATGATGTTCATCATCCTCCAGAAACTACTGTTGATCATTCCCAAGAGGCCGAGGATTCTGATGGCACAGCAGATTTTTCAGACCATTATGTCGATGTGAATGAAGCCATCGAAATCAAAGAAGAGGGGTTGGAGAATTCTCAGGGTGCTGAGCTGCATGCCCAACCCTCAGAGCAAAGGGATATTGTATGTACTATATGCGACGTGACTATTGCCAATGAGAAGTTGATGTCCCTTCACGTTAAAATGCATGAGCCCCGACAGATCACTTGTCCCACCTGTTTTCGGGAATTTGCCTCTGCCTACGATCTCTTTATTCATAAGCAAAAGGTACACAGAGTGTTTATTGATCAGAAGATGAAGTGGTTCTGTGAGCAGTGCGAGAGATTTACAGCGAGTGTTCAGTTTTTGAAACGACATAAACACTGCGCCAAGATTAAGATGAAGTGCAAGTACTGCAGCCAGAAGTTCTTCAAAAAATCAGAACTGCAGATTCATCAGAAGAAAAATCATTATGACGATGTGATGAAGGATCCAGAGTCCGAGAAGTTTGAATGTGAGACGTGTGGAAAGAGTTACGTGGAAAAGTCTTATTACAATTCCCATGTCAGGAAACATCAAGCCAAGCATGAGGGAAGGTTCACGTGTCCAACTTgcgagaaaaaattctcaactgcTGCAGTATTGAAGTGTCACATTGAAGTTAGGCATGAAAAACAGCCGAAATATGTATGTGATATTTGTTCCAAAAGCTTTTGCGGCTCGAGAAATCTGCAAGTTCATCGAAAGAGGCATGCGAGTCAGACATGTCAAGAGTGTGGAGAGAAATTCGAAAACACTCGGATACTGGCTGCACACTTATTGAAACAGCACAATATATCCGTACCATCTGCAGGGAAATATGCGTGTAAAATGTGTGGGAAGAAGTTCCTGAAGATGAGGCTCTTGAGGGACCACAAGAACACTCACACTGGCACGAGACCACATGTTTGTGACACATGTCACAAAACATTCCGAACTTATGCAGCACGATGGGCACACGAGCAGAGGCACAAGAATGGAGGTTTCATCTGCGATTATTGCAAGCATAATTTCACCGATAAAAACAACCTGCGAAGACACATTTCCCGGCACTTGCCACCCGAAGAGTGGCGATACGAGTGTGAAATATGCAACAGGAAATTGCAGAGGCTCTCCCACCTGCAGCGACACGTGGAGAGACACAAAGCGACCTACCCGTACCGATGCAACATATGTGGATTCAGATTTCTCAGTAAGGGAGCTATGACGTCGCATAAAAATCAAACACACAGCGAGATACTCGGTCTCAATTGCGGATAA
- Protein Sequence
- MDLNIAENVCRLCANNGKQYHPIFDSKANPIAGKINNCLPIEIREDDKLPSHICPECLEALDISDKLRAQSLVADEILRQQLRVVLIDKIKQEKDVDTDDESQPMDTTERLFCGICEINFDGMPEFDDHMKASHSSQWICNLCHEDCKTSDDLLRHKYKDHYDSIDQNEGADIDLSKDDDVHHPPETTVDHSQEAEDSDGTADFSDHYVDVNEAIEIKEEGLENSQGAELHAQPSEQRDIVCTICDVTIANEKLMSLHVKMHEPRQITCPTCFREFASAYDLFIHKQKVHRVFIDQKMKWFCEQCERFTASVQFLKRHKHCAKIKMKCKYCSQKFFKKSELQIHQKKNHYDDVMKDPESEKFECETCGKSYVEKSYYNSHVRKHQAKHEGRFTCPTCEKKFSTAAVLKCHIEVRHEKQPKYVCDICSKSFCGSRNLQVHRKRHASQTCQECGEKFENTRILAAHLLKQHNISVPSAGKYACKMCGKKFLKMRLLRDHKNTHTGTRPHVCDTCHKTFRTYAARWAHEQRHKNGGFICDYCKHNFTDKNNLRRHISRHLPPEEWRYECEICNRKLQRLSHLQRHVERHKATYPYRCNICGFRFLSKGAMTSHKNQTHSEILGLNCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438953;
- 90% Identity
- -
- 80% Identity
- -