Basic Information

Insect: Diachasma alloeum
Gene Symbol: lolal
Assembly: GCA_001412515.3
Location: NW:20530-25164[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.3e-05 0.0033 17.2 0.2 2 19 361 378 360 381 0.96

2 8 1.6e-05 0.0012 18.6 2.4 1 23 397 419 397 419 0.97

3 8 3.8e-07 2.9e-05 23.7 0.2 2 23 428 449 428 449 0.98

4 8 3.6e-06 0.00027 20.6 0.3 1 23 455 477 455 477 0.98

5 8 1.3e-07 1e-05 25.1 2.4 1 23 483 505 483 505 0.98

6 8 4.9e-07 3.7e-05 23.4 0.6 1 23 511 533 511 533 0.98

7 8 1.6e-05 0.0012 18.6 9.2 1 23 539 561 539 561 0.98

8 8 7.1e-05 0.0054 16.6 0.8 1 21 567 587 567 588 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.3e-05	0.0033	17.2	0.2	2	19	361	378	360	381	0.96
2	8	1.6e-05	0.0012	18.6	2.4	1	23	397	419	397	419	0.97
3	8	3.8e-07	2.9e-05	23.7	0.2	2	23	428	449	428	449	0.98
4	8	3.6e-06	0.00027	20.6	0.3	1	23	455	477	455	477	0.98
5	8	1.3e-07	1e-05	25.1	2.4	1	23	483	505	483	505	0.98
6	8	4.9e-07	3.7e-05	23.4	0.6	1	23	511	533	511	533	0.98
7	8	1.6e-05	0.0012	18.6	9.2	1	23	539	561	539	561	0.98
8	8	7.1e-05	0.0054	16.6	0.8	1	21	567	587	567	588	0.94

Sequence Information

Coding Sequence: ATGAGTGTAAGAGAAGTGGTCAATTTGTCGCGTGGTTTAGCCAATGTGAGTGAGATGCTGAAAGATGCTATCATCTCCCAAACATATGCAGACGTGATCCTTTGTTGTACAGGAGGACAAAAATTCTCTGCTCATCGCCTAGTGTTATCCGCAGCTAGTCCTTACCTTGAGAGGGTCTTGTCGGCGCACGAAAATACAACTTGCCTTTATGAACCAATTACTGTAATTCTTCCTGACCTAGAGGGCAATGATTTGGCAGCTGTATTGGGATTTATTTACACGGGATATACTGCAGTATCGGGAGACAGATTAGAGGCATTCTCGAGTACCGCACAatttctcaatatcaaaatacCACCGCTTCCAAGTGAAAcaagaaaatgggaaaaatattATCATGATATTGGAATTAACATGACCATCAACAAcaagaaatttaatgaaaaagaatattttcGGGGCGGGATTTTCTATCGGATGTCATCAGGCTCGGCGGGGGAACAGTTACtatatgaaaataattgtttaaatttggaaaaaaaacaaaaaaaaacgacttCAAGTCATGGATTGAGAGATGAAAGGCGACCACGACTTTATGTGGCAAATCGCGTCTCGGCTTCACCATGGTGTCAGATGCTACAACCACACCATTTGTCCCAAAGCCAACCAATTATTATCCTGAAAAACAACAATAAAACTCCAAGTGAAGATACCATTCAGACACAAGATGTAGAATCCCTACAACTTGAAAAACTAATTAATAATAAGCTACCTACGGATGAGAGCAGGAGCAGTATTGGGCTACCATATTCTTCCTTGGCATCACATATTCAAACAGTTGTGCCAACTGCTGAAGTGTGCCCGCCTCAAACAACCACTGCAACTTCTTCTTCCCCTGCAGCAGTGTGCCAGAAAATTATCAATGCTGATGGGCCACGAGATGAAGATGATGTATCATTAATGACCTTGCTGGTGGCGGGTGAGCCAGCACCGCCGGCGTCTATGTCATcgaatagaaaaatcaacatgcCATCAATTGAATATAGTGATGATTCCAACTCGGCGAGAAACCAACTGAGATGTCAAATTTGTGACAAGAATTTTACAACTCGAGCATCATTAAAGGTTCACCCACGCCTGATGCTGCACTCATTGTCAGCAGGGGAGCAGGAGAATATTAAGCTATTCCGCTGTAAACTCTGTGGAAAAGGATTCTCCCAGCTACGAAATTACAAATATCACACAAGTATTCACGAGGGAACAGGAGAATTTTCCGCCACCTGTCCCGAATGTGGAAAGAGCTTCAATGACCGAGGCTACTTGGGCTCACACATGAAGATACACAACAATAGAAAGGAGTACAGCTGCGGTGAGTGCGGCAAGAGCTTCAATCAGCGCGTAGCATACAATATGCACGTAAAGATCCACAGTGGCGTCAAGCCCCACCGATGTGATCAATGTGGCAAAGCTTTTTCACGAAATATCTTGCTCAAACAACATTTGAGAACTCACACGGGCGAGAGACCATATCAGTGTGACATATGTCAAAAAGCCTTCGCTGATCGATCCAACATGAGACTTCACACAAGACTCCACTCTGGATTGAAACCATACCAATGTCACATTTGCTCAAAGGCATTCACCAAAAAGCATCATTTAAAAACCCACCTCAACTATCACGCTGGCATTAAACCCTACTCTTGTCCCAACTGTTCACTGGCCTTTTCCCAGAGCAGCAACATGAGAACCCACTTCAAGAGATGttcaattaataataaataa
Protein Sequence: MSVREVVNLSRGLANVSEMLKDAIISQTYADVILCCTGGQKFSAHRLVLSAASPYLERVLSAHENTTCLYEPITVILPDLEGNDLAAVLGFIYTGYTAVSGDRLEAFSSTAQFLNIKIPPLPSETRKWEKYYHDIGINMTINNKKFNEKEYFRGGIFYRMSSGSAGEQLLYENNCLNLEKKQKKTTSSHGLRDERRPRLYVANRVSASPWCQMLQPHHLSQSQPIIILKNNNKTPSEDTIQTQDVESLQLEKLINNKLPTDESRSSIGLPYSSLASHIQTVVPTAEVCPPQTTTATSSSPAAVCQKIINADGPRDEDDVSLMTLLVAGEPAPPASMSSNRKINMPSIEYSDDSNSARNQLRCQICDKNFTTRASLKVHPRLMLHSLSAGEQENIKLFRCKLCGKGFSQLRNYKYHTSIHEGTGEFSATCPECGKSFNDRGYLGSHMKIHNNRKEYSCGECGKSFNQRVAYNMHVKIHSGVKPHRCDQCGKAFSRNILLKQHLRTHTGERPYQCDICQKAFADRSNMRLHTRLHSGLKPYQCHICSKAFTKKHHLKTHLNYHAGIKPYSCPNCSLAFSQSSNMRTHFKRCSINNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438228;
90% Identity: iTF_00438228;
80% Identity: iTF_00438228;