Dall006902.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:627756-630744[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00031 0.023 14.5 2.2 1 20 140 159 140 162 0.96 2 13 0.0011 0.083 12.8 1.8 1 23 168 191 168 191 0.92 3 13 1.8e-06 0.00014 21.6 0.9 1 23 197 219 197 219 0.98 4 13 8.5e-06 0.00064 19.5 0.4 1 23 322 344 322 344 0.98 5 13 0.00064 0.049 13.5 0.5 2 21 352 371 351 372 0.93 6 13 0.00017 0.013 15.4 2.6 1 20 392 411 392 414 0.92 7 13 0.0025 0.19 11.7 0.4 1 23 419 442 419 442 0.95 8 13 1.6e-07 1.2e-05 24.9 1.3 1 23 448 470 448 470 0.99 9 13 7.1e-05 0.0054 16.5 4.2 1 23 477 499 477 499 0.99 10 13 0.0002 0.015 15.2 0.4 3 23 507 527 505 527 0.97 11 13 0.00022 0.017 15.0 0.2 1 23 533 556 533 556 0.96 12 13 0.36 27 4.9 0.1 1 23 570 592 570 592 0.92 13 13 0.0027 0.2 11.6 0.0 3 23 726 746 724 746 0.96
Sequence Information
- Coding Sequence
- ATGGAAACATCGGACAATGAGCAGTACATAACGTACTCCCTGTCCTCAGTCCACGACCTTCAGCAAACAATAATTTCCCACGAGGAGGTGTGCGAGCCGACGGTATCAGTTCTCTCCGAGACACACGCGGAGATTCTCGGTGATAAAACCTCCTCCGAGGACGACGAGAACTCCATCGTCTACCCAATCTACATAAAACAAGAGGAAATCCCCCAGTACACATCTGGCGATGACGAGTCAATGGCAGTCGAGGCGCTCCGTCAATTGGGGGGAATGTACCCCACTTTCGACGAAAAGTCAAAAATACCAAATTCATCGATGAACGACCCCACTACACCCCCCTCTGACAAACCCCCGATGAGTAAAAGTTGTTCGACAAAGAGAGAGCCATTATCAGGAAGCAAGAATTTTGGCAAATACTCTTGTCAAACGTGTGGCGAGAAATTCGAGAGAAAACTAGACCTGAATAACCACATGGTTTGCCACCAGGTGGATCGTCCCCACGCCTGCAGAACCTGTGGCAACCTCTTCCGCTCGAAATCCAGCCTCCAAACTCACATAACCCAAGTCCACAATCAGGAGAAGTCCCACAAGTGTACAATATGCGGAGCAGATTTCCAGAGGCCATCGTCCCTCTCCAATCACATGAAAATCCACACGTACGTGGCAGGAAGGGCTTTGATTTCCCAATCAGACAACTTGTCGCAGTCTCCAACATGTTCAGGTCAAACAGTTGAGAATTACCAAGTGACCCAGGTGAATTGGCAGAGCTACACATTCCAGACTGACCAGAACGAACTGGACCAGGAGAAACTCGAGCTTCAGGAGTTCACGGTATTGCCAAATGGCGAGGTTGCCCAGTTCGAGTATCCTCAGACGTACAACCTCAACCTGGAGGGTCTGCCATTTGAGCAGCGAAAGGGCCAATTCGTGACAGTTGAGGTGGAGCAAAAGCCAGGGCAGTTCACCTGCACCCACTGTGGCATTGGCTTCACAAGAGCCACCGCCCTGGCGTCCCACGAGAAGATTCACAAAGCCTGGACGATGCCGATAGAGTGTGAATTCTGCGACAAGCAATTTCAGGACAGCAATCACTTGGCCTCACACCAGACAACGTGCGCCAAAAAATTGATGCTCAGCAATGGTGACAATGCCAATGGCAAGTGGTCCAAGCACGCCTGCTCTGAGTGCGGCAAAAAATTCACCACCAAGCAGAAGATGTTCCGCCATCAATGGATCCATCGGAAGAAGACACATTCCTGTGAAGTTTGTGGTGCCCAATTTGAGAAGCAAAATCAGCTGGACGAGCACAGATTATCAGCACACCCTGGGATCTCTCCGTTCACATGTCCAGAGTGTGGCAAGTGTTTTGTGTCGAGACAGGGCTTGTGGGAGCACACTAGAACACACGCCGAGGGGCCAGCGCATTTTCAATGTGACACATGTTCCAAGACATTCTCCTCGAGACAGGGCTATCTGATACACCACAGAACTCACACTGGGGAGCGGCCCTATGGCTGCAAATTCTGCTGGAAGGCTTTCAGGGACGGTGGCACACTGAGAAAACACGAGAGAATTCACACTGGGGAGAGACCACACGTGTGCCCTCTGTGCTCGAGGGCGTTCAATCAGAAGGTGGTGTTGAGAGAGCATGTGAGATGGGTTCATGCTGCTGGCAAGAACGAGACTGAAGTTGTTGGCCCACCCTTTCCCTGCCCTCTCTGTGGGGCCTTGAATCAGGACAGGGATGAGCTGTGTGCTCACATTGTCAAGCACTCGGATCAGATGATTGCGGAGGCCAAGGCCAAGAGTGTCATTGATCCGCTGAGTACAAAGAGCAGTAAGAAGAAGGGCAAAGGAAAGGGCAAGCCAAAGCTCGCCAAGATCCAGGACGGCGAGACGCTTCTGCTCGTGGCCACTGAGGAAGCTGGAGAGGATCTGCAAGGGGACCAGCAAGAGGAGGTCAAGGAAGTTGTGAAAGAGGAGGTCAGTCATGTGCTGAGGGTGCAGTTCGTTGATGATAAAGAGAGCACACTGCAGATCATTAGTAAGGAGAATGAAGCCCTGCCTGTTCTTGCTATTCCCAATGAAGGTGAGGAGTTTGGGGGAGAAATTGAGACCATTGAGGAGGGGGTTTATCAGGAGAGTGACGATGAGAGGGAGATGGAAATCATCTGCGGGATATGTGGGGACGAATTTGGGGATAAGAATAATCTTATGGAGCATGTTAAAATTCATATTTAA
- Protein Sequence
- METSDNEQYITYSLSSVHDLQQTIISHEEVCEPTVSVLSETHAEILGDKTSSEDDENSIVYPIYIKQEEIPQYTSGDDESMAVEALRQLGGMYPTFDEKSKIPNSSMNDPTTPPSDKPPMSKSCSTKREPLSGSKNFGKYSCQTCGEKFERKLDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQTHITQVHNQEKSHKCTICGADFQRPSSLSNHMKIHTYVAGRALISQSDNLSQSPTCSGQTVENYQVTQVNWQSYTFQTDQNELDQEKLELQEFTVLPNGEVAQFEYPQTYNLNLEGLPFEQRKGQFVTVEVEQKPGQFTCTHCGIGFTRATALASHEKIHKAWTMPIECEFCDKQFQDSNHLASHQTTCAKKLMLSNGDNANGKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGAQFEKQNQLDEHRLSAHPGISPFTCPECGKCFVSRQGLWEHTRTHAEGPAHFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVVGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKSVIDPLSTKSSKKKGKGKGKPKLAKIQDGETLLLVATEEAGEDLQGDQQEEVKEVVKEEVSHVLRVQFVDDKESTLQIISKENEALPVLAIPNEGEEFGGEIETIEEGVYQESDDEREMEIICGICGDEFGDKNNLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273264;
- 90% Identity
- -
- 80% Identity
- -