Dall000220.1
Basic Information
- Insect
- Diachasma alloeum
- Gene Symbol
- -
- Assembly
- GCA_001412515.3
- Location
- NW:321846-327834[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.2e-06 0.0007 19.3 0.2 1 23 81 104 81 104 0.97 2 12 1.4e-06 0.0001 21.9 0.5 3 23 112 132 110 132 0.97 3 12 1.4e-06 0.00011 21.9 1.4 2 23 139 160 138 160 0.97 4 12 1.2e-06 9.1e-05 22.1 0.4 1 23 166 188 166 188 0.98 5 12 0.003 0.23 11.4 1.2 1 23 212 234 212 234 0.97 6 12 0.021 1.6 8.8 1.2 2 21 242 261 241 262 0.92 7 12 1.1e-07 8.7e-06 25.3 1.6 1 23 460 482 460 482 0.98 8 12 0.00012 0.009 15.8 1.4 1 23 489 512 489 512 0.95 9 12 2.6e-05 0.0019 17.9 0.1 1 23 520 543 520 543 0.97 10 12 2e-06 0.00015 21.5 4.3 1 23 549 571 549 571 0.98 11 12 1e-05 0.00076 19.2 3.9 1 23 577 599 577 599 0.98 12 12 3.2e-06 0.00024 20.8 2.8 1 23 605 627 605 627 0.98
Sequence Information
- Coding Sequence
- ATGCATGCTGACAACAATGACCGATGGTATGGAGCACTAGAAGTTTTTAAATGCTCCAAAATAGTCATTCGAGTTGAAATGATGTTGAATGTTAATTGTGAGAGGGAACGGTTGAGTGATACCTTTTCCCCGAGTGGAGATAATTTTCGGGGGAATGTGTGTGTCGAAACTAGAGTGAATAATGCAAATAATACTCGACAATTGAATTACAAGAATGTTGGGAGTAGTGTGGAGAGACCCTTCGTGTGTCTGGAATGTGATATGAGTTTTGAGCGAGCCTCTCAGCTCGACTACCACCAGCGGAGTGTCCACCTGGGTGAGAAGACTCAGATATGCCAGATCTGTGGGAAACGGTTCTTCAGAAAGGCTGATTTGAATACTCATCTGAATATACACCTGGGGACCAATCAATCTGTTTGTAATATTTGCGGGCGGAAGTTCAATCATGTGTCAAATTTAATTAGACACTCTAGAGTTCATGCAGGAATGAAGCCATACCCGTGCTCAATATGTGGCAAAAGATTTACCCAGATAAGCTCAGTAGTCAGGCACAAACggattcatgaaaaaaaatcgaatagtGTCACTGGAAAAGATGAGGATACTGGAGTGAGGAAATTGATAAAGCGTAGACATTATTGCAAAATATGTGGGGATACTTTTCCCTTCATCGTTCTCCTGCGACAGCATGAGAGAAGGCATTTTGGAGCTGACGGAAGCGTCGAGTGCGAACGATGCAAACTGCAATTTGGGACGCAATCACTACTCCGGGATCACAAATGCAGCCTGCCTGCCCCCCACGACGAAAAAACTGACCCCTCCACCAACCGATTAGTCCATGTGGACCTGGGCCAGCAATTGTTCGAGTTAGAAATCGACTACTTATCCCAAAAAGACCTGGACCAATCACGAAGCGTGAGTTCTCTCGACGAGTCCGTGGAAGTTTGTTTAATAAACAAAGATTTAATCGAGCCCTTGGACCTGCAGAGTCTAGGCGATCTGCACAGTTCCTTCAATCTGTCAGGATCAACTAATCCTCCGAACGAGACTCAGAGATTTCCCGAGGATTCTGACCTCGAGCAAGTGAAACCCTCGGACTTTCTGACAACTTTCGAGGAAATCATAGGATACCATGAGAACCAGACCCCAGGGGTGCGACTGGTGCAGCATGAGGAGGGAGACCAGTTCTTCGAGCTCGTCAGAGACCCTCTGACGTACCTCGGAGACAGCAAAAGCTACGATAGAACGCAGGAAACTGACGATTCGAACAGCAATGGTATCGAGAATATCCAGGACCTGGCAAACGATAAAGTCACGACCAAGAAGAGAACCAGAAAGAAATCGTCGAGTGATAAGAGTAGAAGTCAAGAGCAGAAGTACGAGTGTACGATCTGCAAGAAAAAATTCTCGACAGCGTCGAACCTGAAGCAGCACACGGGCACCCACTTCCTGGATCAACAGAAGTTCCACTGCAAAGAATGTGGAATGTCATTCGCCTGGAAGTCAACTCTGAATAAACATCTGGCGAGCAACCACAGGCCTGATGGACCCCAGAAATTCGTCTGTGAGATCTGTCCCAGGGTCTACTCGACACTCTCTCAAGTCAATGAACATGTGAAGAGAGATCACCTGAAGGTGCGCAACCACGTGTGCGAGGAATGTGGGAAGTCTTTCTTCAAGAAGTTTGATCTGAAGTCCCACAGGAGAACTCATACGAAGGAGCGACCCTATGTCTGTCGAGTTTGTGATAAGACTTTCTACCATCAGAGCCATATCATCAGACACGAGAGGATCCATTCGGGGGAACGACCGTACTCTTGTGATTTCTGCCAGAAGACGTTCTCTCAGCTGAGCTCGTTGAGGGTTCATAAGCAGAGGCATCAGAATGAGACTAGGATGGATATCTTGGAGTATCAGAATAATGAGGACGATCCTATGGCATTGAACAGTTTTTGA
- Protein Sequence
- MHADNNDRWYGALEVFKCSKIVIRVEMMLNVNCERERLSDTFSPSGDNFRGNVCVETRVNNANNTRQLNYKNVGSSVERPFVCLECDMSFERASQLDYHQRSVHLGEKTQICQICGKRFFRKADLNTHLNIHLGTNQSVCNICGRKFNHVSNLIRHSRVHAGMKPYPCSICGKRFTQISSVVRHKRIHEKKSNSVTGKDEDTGVRKLIKRRHYCKICGDTFPFIVLLRQHERRHFGADGSVECERCKLQFGTQSLLRDHKCSLPAPHDEKTDPSTNRLVHVDLGQQLFELEIDYLSQKDLDQSRSVSSLDESVEVCLINKDLIEPLDLQSLGDLHSSFNLSGSTNPPNETQRFPEDSDLEQVKPSDFLTTFEEIIGYHENQTPGVRLVQHEEGDQFFELVRDPLTYLGDSKSYDRTQETDDSNSNGIENIQDLANDKVTTKKRTRKKSSSDKSRSQEQKYECTICKKKFSTASNLKQHTGTHFLDQQKFHCKECGMSFAWKSTLNKHLASNHRPDGPQKFVCEICPRVYSTLSQVNEHVKRDHLKVRNHVCEECGKSFFKKFDLKSHRRTHTKERPYVCRVCDKTFYHQSHIIRHERIHSGERPYSCDFCQKTFSQLSSLRVHKQRHQNETRMDILEYQNNEDDPMALNSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -