g52011.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- stc
- Assembly
- GCA_003013835.2
- Location
- ML016039.1:314684-342337[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.3e+05 -4.7 3.4 6 10 345 349 342 349 0.69 2 12 2 1.3e+05 -4.2 0.4 4 10 375 381 375 381 0.82 3 12 3.1e-06 0.19 14.5 11.8 3 18 389 404 385 405 0.94 4 12 3.5e-07 0.022 17.5 17.2 1 18 441 458 441 459 0.99 5 12 5.1e-10 3.2e-05 26.5 13.7 1 19 499 517 499 517 0.99 6 12 8e-08 0.005 19.5 14.6 4 19 564 579 557 579 0.87 7 12 1.1 6.9e+04 -3.3 2.2 5 10 608 613 608 613 0.93 8 12 0.003 1.8e+02 4.9 11.2 1 11 619 629 619 641 0.90 9 12 7.9e-10 4.9e-05 25.9 13.8 1 18 646 663 646 664 0.98 10 12 0.00046 29 7.5 13.8 1 19 703 720 703 720 0.89 11 12 1.2e-05 0.75 12.6 17.8 1 19 756 775 746 775 0.85 12 12 0.028 1.7e+03 1.8 16.9 1 18 785 803 785 804 0.92
Sequence Information
- Coding Sequence
- ATGTCTTTTTACGATAATCAAGCAACTAGTTATCCAGGCGGTACTTTTACGTCAGCCGAAAATTTTTTCACCGGATCGCAAAGTGGCCACTTTTCTGGAACCACTCCAGTCGATATATCTCATTCCACATTGGAGCCAACAGCCAGAGAGTTCTTTCCTACCTCTAGTTTTTCTGAGACTAATAATGGTGCTGTTAGGAGGAGACCTCAACAACATAATAAATTTAGAGATAATAAGGAATCTGGTAATTGGAGAAATAGGTATGGTAGTGGGAGAACATTCAACAGCTCAAGATCCAATTTTAGCAATAAAACCGGCAGAGAAGATCAGTATGCTCATGTTCCTGCAAACTATAGAAGCGATAATTCATACAATACAACTGATTTTCAAAATGATGAAGAAAGACAGCCTGAGCCAGAAAGAAATTCTCAAAAATACCACGAAGATCATTACGATGATCACGTAGAATATAACGATTTCCAAAGTAGAGATCAAGGTAACAACTCAGTGCCGAGTTCCTCAAGAAATTACAGAAATACTAAGAGATATGATAACTATTATCAAGGACGGTCCAAAGGTAACTACAATGAAAAGAATTCCATGAACTATGATGATAAAAGGagtaataattataaaaaacaaaacaataacttTACAAATGAAGATAATTCGAGAAGAAATAACCAAACTCAGAAGAGAAACAGCTACAAATCTTATTATGATTCAAGAGGTAGTCAGAAATCAAGAGAAGGTTCTTCGTCTAATAATTGGAGAAAAGAAAATGTGGGTGTAGAAAAAAGCTCGTCCAATGTGATTAAATCTAGTACCAAGAAATTGGATGCAGCCTCTCAACGAGAGAGATTAATAGAAATGCTCAATAGACGTATGTTAGAGTGTTTAGTCTGttgcgaaaaaattaaaaatactgaTAAAGTGTGGTCGTGTATCCTCTGCTACCACATATTCCATTTAAATTGCGTAGTAGCCTGGGCAAAGTCGTCCAAGATTGAAAATGGCTGGAGATGCCCAGCATGCCAAAACGTTTGCAGTGAAGTGCCCAAGCAGTACAAATGTTATTGTAATAAGGCAGTGGAACCGAGGTACGAACCTGGAGTAATTCCTCATGGCTGTGGCGAAATGTGCCTCCGAAAAGGTAGAAATTGCGAACACAAGTGCACCATTCTGTGCCACCCTGGGCCCTGTCCCGATTGCGTGATTATGATATCTAAATCTTGTGGTTGCGGGGCAACACAACAAATGGTAAAGTGCAGCACAGATATAGAACTGACCTGTGGCGCCATCTGCGACAAACAGTTGGAGTGCGGGTTACATCGTTGTCTAGAACACTGCCATCAGGGTGATTGTCCGCCGTGCGGAAAAAGTATCATACAGGAATGTTATTGTGCCAAAGAAGGCCGAAAGGTACCTTGTTGCGGCGAATACAAAGGCCAAAACCATTATTCGTGTGGGGAAGTATGTGATAAACTATTATCTTGTGGAAATCATCGTTGCCAATCGATATGTCACGAAGGTCCGTGCGAAATCTGTCCTGTGGATATAAGTGTAATCAAAACGTGCCCTTGTGGAAGATCTCCTCTTAAAACCCAGAGGGTATCTTGTCTAGATCCTGTTCCATGCTGCGATAAGGTGTgcgataaaattttaaaatgtggcCAACCCAACTCTCCGCATCGTTGTGAAGCTACGTGCCACGAAGGTGCTTGTCCTCCTTGTCCATTAACTACAGTTGTTAAATGCAGATGTGGTCACATGGACAAGGAAATACCGTGTCAAGAACTTACAACTAAAGCTGACGATGCCCGGTGTCAGAAAAAATGTACCAAAAAACGTTTATGCGGCAAACACAAATGTAACCAACTATGCTGCATAGAGATAGAACATATCTGCCCTCTTCCATGCAACAGATTGCTCTCCTGTGGCCAGCACAGATGCGAACGCACATGCCACTCCGGCCGTTGTCCTACTTGCGTCGAAACCAGCTTCGAAGAACTGTACTGCGAATGCGGAGCTAGCGTCATCTATCCTCCGGTTCCGTGCGGTACCAAACCGCCCAACTGCCTTAATCCGTGCTCGAGGCCGCGGCACTGTGGACACGAAGTCAACCACGCGTGTCACACTGGGCCGTGTCCCCCTTGCACGGTACTTTGTAAGCGGTGGTGCTACGGACATCATGAACAAAGACCTGCGATACCGTGTCATCAAGAAAACTTCAGTTGTGGATTGCCTTGCGGGAAAGACATGTCTTGCAAAAGGCACAAATGCGTTAAACCTTGTCACGACGGCCCGTGTCCTACACCCTGTAAGCTGCCGTGTAATGTACCTAGAGAGTTGTGCGGTCATCCGTGTGGCAGgccATGTCACGTACCACCCTGTCCGGAAAGTAGTTGCAAGCAGATGGTACCAGTTACGTGCCCGTGTGGTCTTCAAAAAAGTACGAGACCCTGTACGGAAGTCGCTGATGAATTCAAGAACATCCAAATGGCGCAGCTAAAGGAAAAGATGGGAAGCTTGTCGACGAGTTCCACCATCGATTTAACAGATATTTTTAACGCTCCCAAAAAGCCGACTGTTTTAAAGATattggAATGCACAGAAGAATGCCGAGTTCTGGACAGAAACCGTAGACTAGCAATAGGCCTACAAATCCGCAATCCAGACTTGAGCCAAAAGCTAACACCAAGATACTCAGATTTCATGAGACAGTGGGCCAAAAAGGATCCACACTTTTGCCAAAAAATCCACGACAAACTTTCGGAACTCGTTCAACTGGCCAAAAACAGCAAACAGAAGAGCCGCTCCTATTCCTTCGACTCAATGAACCGTGACAAAAGGCACTTCATCCACGAGTACTGCGAGCACTTCGGCGTGGATAGCGCTGCTTACGACATGGAACCAAACAGAAACATAGTAGCCACAGCCGTTAAGGATAAGTCGTGGCTGCCTAGTATGAGTCTGTTGGAGATTATTCAAAGGGAGAACGGCCAGAGGAGGGTTCCCGGGCCGGTACTGGGGGCACGAGGCCCCACCAGCAAAACCGAAACAGTGTCCTTGAAGTTGCCTAGCAGAGTACAAAGGTCGAACACGCCTCCTAATGAAATTGTTGATAATTTCAGATCAtcatag
- Protein Sequence
- MSFYDNQATSYPGGTFTSAENFFTGSQSGHFSGTTPVDISHSTLEPTAREFFPTSSFSETNNGAVRRRPQQHNKFRDNKESGNWRNRYGSGRTFNSSRSNFSNKTGREDQYAHVPANYRSDNSYNTTDFQNDEERQPEPERNSQKYHEDHYDDHVEYNDFQSRDQGNNSVPSSSRNYRNTKRYDNYYQGRSKGNYNEKNSMNYDDKRSNNYKKQNNNFTNEDNSRRNNQTQKRNSYKSYYDSRGSQKSREGSSSNNWRKENVGVEKSSSNVIKSSTKKLDAASQRERLIEMLNRRMLECLVCCEKIKNTDKVWSCILCYHIFHLNCVVAWAKSSKIENGWRCPACQNVCSEVPKQYKCYCNKAVEPRYEPGVIPHGCGEMCLRKGRNCEHKCTILCHPGPCPDCVIMISKSCGCGATQQMVKCSTDIELTCGAICDKQLECGLHRCLEHCHQGDCPPCGKSIIQECYCAKEGRKVPCCGEYKGQNHYSCGEVCDKLLSCGNHRCQSICHEGPCEICPVDISVIKTCPCGRSPLKTQRVSCLDPVPCCDKVCDKILKCGQPNSPHRCEATCHEGACPPCPLTTVVKCRCGHMDKEIPCQELTTKADDARCQKKCTKKRLCGKHKCNQLCCIEIEHICPLPCNRLLSCGQHRCERTCHSGRCPTCVETSFEELYCECGASVIYPPVPCGTKPPNCLNPCSRPRHCGHEVNHACHTGPCPPCTVLCKRWCYGHHEQRPAIPCHQENFSCGLPCGKDMSCKRHKCVKPCHDGPCPTPCKLPCNVPRELCGHPCGRPCHVPPCPESSCKQMVPVTCPCGLQKSTRPCTEVADEFKNIQMAQLKEKMGSLSTSSTIDLTDIFNAPKKPTVLKILECTEECRVLDRNRRLAIGLQIRNPDLSQKLTPRYSDFMRQWAKKDPHFCQKIHDKLSELVQLAKNSKQKSRSYSFDSMNRDKRHFIHEYCEHFGVDSAAYDMEPNRNIVATAVKDKSWLPSMSLLEIIQRENGQRRVPGPVLGARGPTSKTETVSLKLPSRVQRSNTPPNEIVDNFRSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -