g60765.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016465.1:14819-16720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.59 1.5e+02 5.8 0.2 1 23 36 59 36 59 0.94 2 18 0.13 33 7.9 0.1 6 23 116 134 116 134 0.91 3 18 0.98 2.5e+02 5.1 0.1 2 23 162 183 161 183 0.81 4 18 0.03 7.8 9.8 1.6 2 23 211 233 210 233 0.94 5 18 0.3 77 6.7 1.2 1 23 237 260 237 260 0.91 6 18 3.3 8.5e+02 3.4 1.6 1 23 263 286 263 286 0.92 7 18 9.6 2.5e+03 2.0 0.3 2 19 289 306 288 308 0.80 8 18 9.4 2.4e+03 2.0 1.3 1 23 310 333 310 333 0.70 9 18 0.00032 0.083 16.0 1.4 1 23 361 384 361 384 0.94 10 18 3.9 1e+03 3.2 0.2 2 19 387 404 386 409 0.84 11 18 0.0046 1.2 12.4 0.7 2 23 413 435 412 435 0.95 12 18 0.53 1.4e+02 5.9 1.2 1 11 437 447 437 450 0.91 13 18 0.01 2.6 11.3 0.4 2 19 464 481 463 482 0.96 14 18 0.73 1.9e+02 5.5 0.4 2 23 506 528 505 528 0.95 15 18 0.0015 0.39 13.9 0.4 1 19 530 548 530 553 0.95 16 18 0.0048 1.2 12.3 0.4 2 23 557 579 556 579 0.95 17 18 0.0051 1.3 12.3 0.4 1 19 581 599 581 604 0.87 18 18 0.28 73 6.8 2.6 2 20 608 626 607 631 0.89
Sequence Information
- Coding Sequence
- ATGTTTAGTTATGATGAAAAAGATAGACTTCGGTGTCGCTTAAACTGCATGTGGTATGGATTTAGGACTGATGATTTACGAAAGCAGCATTACAAAAAGCAGCATTTTAGATGTGCATATTGTGAGATTGCCTTTTTAGATATTGAAGATAGGAATCGTCACCAAAATAACGAGCATATCATATTTCAAAGCGAATGTCAATGCCCGTTGTATTTTAGAACAGCAAATCTAGCTTATTATCATTGGAATGTCAAACACAGGTTTACTTGTGAATGTTGTGGCAAATGGTTTGATTCAGTTGAGGAGAGAAATGTTCACGAGGAAGCCCGTCCAAAGTGTATACCTTGTGGTATATCCTTCAAAACAGATGACCAACTAACGTCTCATAATAAAGATATTCACTCATTTGCATGTGAATATTGTTATGATTTGTTTGACTCCATCAAGGCGAGAGATATCCATTTTAAAGAACATTTTTTCGTGGAGTGTCAGGTATGTGGTAGTAGATTCAAAACATATGAGGAGGCAATTCCGCATGCAAATAAACATTTAACGTGCAAATTTTGTGACGTTTTGTTTCTGTCCATAAATGAGAAAAATATTCACGACAAAGAAGAACATTTAAAATGTGAGTGTCCGAATTGCGCTACATTTTTTACAAAAGATAATAAACTGCAACAGCATATTAAAGCTGAACATGATTCAGCGTTTTTATGCTCATATTGTGATGATAAGTTTGAGACAAAGGAGAAAAGAAATCAACATATAGAAGAGAAACACTATTTTTATAAATGCAGGGATTGTGAATTCTCCTCCTCTGTTTATGGAATCCTTTGTCAGCATGTGAATGTTAAACACTGGATTAAATGTAAGTATTGTTCTGTGAATTTCTGGCCAGAGGAGGAACTAAATGCTCATTGTATTTATCACAAGTGCCAACATTGCGATTTATTCATCAGTGGGGCAATAGGCATGGGTAACCATAACAGAAGTAAACATAAGTTTTGGTGCGAACATTGTAATAATTGGTTTACAACAGCGCAAGAGAGAGACCATCACGAACGAGAAGTACATGAACCATTTAAGTGTTACCATTGTGATAGTTCTTTTAATGAAAGTGAAAATTTGCAGATACATATTGAAGGTAAACATGATTTAAGATGCCAATATTGTGATGATTCGTTTGAAAGTTTTGAACAGCAAAATATCCACGATATCAGCGTACATCTAACAATTAAGTGCCCTTATTGCGATAAATTGTTTAGAGAAGATAAACACCTACAACCGCATATTAATATCAATCATTATTTTGAATGCCGATATTGTGATGAAACATTTTCATACGACCAAGAAAGATCATTTCATGAGAGATGCATACATCTTACAATTGAGTGCCCACATTGTGATAGGTTATTCAATGAAGAAAAAGATCTACAAAAGCATAATCCACTTTGTAAAAACTTATATGGTAATAAATCCCATACATCTGGTAATGCGAGTAATTTGAATTCTGTTAAGTGTCCAAATTGTATTAGATTGTTCAGCTCAGATCAGCAGCTAGATACtcatattcaaaataaacataattttcaATGCCCGTATTGTAATCAAGGGTTTAAATCTTCTGAGGAGGTAAATTCCCATGATAACGACGTTCATTTAACTATTAAATGTCCACAATGCGATAGTTTATTTAGATCAAATGAGCTACTTCGTCTGCATGTTAAACTAACACATAATTTTGAATGCTTATATTGTGATAAATCTTTTAAATCTCTTCAAGAGACAGAGGCTCATGATAGATGGGTACATGTAATCACTGTATGCCGACGTTGCAAAAAGTTCTTCAGGGAATATAAACAGTTAAATGAACATAATAACCTCAAACGACATTATTGGTAA
- Protein Sequence
- MFSYDEKDRLRCRLNCMWYGFRTDDLRKQHYKKQHFRCAYCEIAFLDIEDRNRHQNNEHIIFQSECQCPLYFRTANLAYYHWNVKHRFTCECCGKWFDSVEERNVHEEARPKCIPCGISFKTDDQLTSHNKDIHSFACEYCYDLFDSIKARDIHFKEHFFVECQVCGSRFKTYEEAIPHANKHLTCKFCDVLFLSINEKNIHDKEEHLKCECPNCATFFTKDNKLQQHIKAEHDSAFLCSYCDDKFETKEKRNQHIEEKHYFYKCRDCEFSSSVYGILCQHVNVKHWIKCKYCSVNFWPEEELNAHCIYHKCQHCDLFISGAIGMGNHNRSKHKFWCEHCNNWFTTAQERDHHEREVHEPFKCYHCDSSFNESENLQIHIEGKHDLRCQYCDDSFESFEQQNIHDISVHLTIKCPYCDKLFREDKHLQPHININHYFECRYCDETFSYDQERSFHERCIHLTIECPHCDRLFNEEKDLQKHNPLCKNLYGNKSHTSGNASNLNSVKCPNCIRLFSSDQQLDTHIQNKHNFQCPYCNQGFKSSEEVNSHDNDVHLTIKCPQCDSLFRSNELLRLHVKLTHNFECLYCDKSFKSLQETEAHDRWVHVITVCRRCKKFFREYKQLNEHNNLKRHYW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -