Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML016465.1:4371-5873[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.3 5.8e+02 3.9 0.2 5 23 6 24 5 24 0.92

2 14 4.1 1.1e+03 3.1 0.2 2 19 26 43 25 43 0.90

3 14 8.7e-05 0.023 17.8 1.7 1 23 51 74 51 74 0.96

4 14 0.37 95 6.4 2.0 1 23 78 101 78 101 0.97

5 14 1.5 3.9e+02 4.5 0.7 1 23 181 205 181 205 0.67

6 14 0.19 50 7.3 4.6 1 23 208 231 208 231 0.93

7 14 2.9 7.6e+02 3.6 0.2 2 19 234 251 233 256 0.83

8 14 0.00053 0.14 15.4 0.3 2 23 260 282 259 282 0.96

9 14 4.9 1.3e+03 2.9 0.2 2 10 285 293 284 295 0.93

10 14 0.012 3.2 11.0 0.3 2 19 311 328 310 329 0.96

11 14 1.5 3.8e+02 4.5 0.9 1 23 352 375 352 376 0.93

12 14 0.00035 0.092 15.9 2.1 1 19 377 395 377 395 0.94

13 14 0.00074 0.19 14.9 0.7 2 23 404 426 403 426 0.95

14 14 0.014 3.5 10.9 0.3 1 22 428 449 428 451 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.3	5.8e+02	3.9	0.2	5	23	6	24	5	24	0.92
2	14	4.1	1.1e+03	3.1	0.2	2	19	26	43	25	43	0.90
3	14	8.7e-05	0.023	17.8	1.7	1	23	51	74	51	74	0.96
4	14	0.37	95	6.4	2.0	1	23	78	101	78	101	0.97
5	14	1.5	3.9e+02	4.5	0.7	1	23	181	205	181	205	0.67
6	14	0.19	50	7.3	4.6	1	23	208	231	208	231	0.93
7	14	2.9	7.6e+02	3.6	0.2	2	19	234	251	233	256	0.83
8	14	0.00053	0.14	15.4	0.3	2	23	260	282	259	282	0.96
9	14	4.9	1.3e+03	2.9	0.2	2	10	285	293	284	295	0.93
10	14	0.012	3.2	11.0	0.3	2	19	311	328	310	329	0.96
11	14	1.5	3.8e+02	4.5	0.9	1	23	352	375	352	376	0.93
12	14	0.00035	0.092	15.9	2.1	1	19	377	395	377	395	0.94
13	14	0.00074	0.19	14.9	0.7	2	23	404	426	403	426	0.95
14	14	0.014	3.5	10.9	0.3	1	22	428	449	428	451	0.86

Sequence Information

Coding Sequence: ATGAATGCCTGGTATGTATGTGGTAGTAGATTCAGAACAAGAGAGGACAAAACTTCGCACGCAGTTAAACATTTAACGTGCAGATTATGTGATGTTTTGTTTAAGTCCAACGATGAGAAAAATATTCACGACACAGAAGTACATTTAAAATTTGAGTGTCCGCATTGCACAgcaatttttactaaaaataagAAACTGAAACAGCATATTAAAGCTGAACATGGTTCAGTATTTTCATGCTTATATTGTGTTGATAAGTTTGAGACAAAGGAGAAAAGGAATAAACATATAAAAGTGAAACACTTATTTGATAAGTGCCGGTATTGTGAATTTTCCTCTATTTATCAACTCGTTTCCCGGCATATGGAGATTAAACACTTGTTAAAATGTAAGTATTGTTCTGAAAACTTCTGGCCAGAGCAGCAGGATCTAAATAGTCATCTAATAGATCACAAGTGCCAAAATTGTGATAAATTCTTAATTGGGCACTTAATTTATCGTCTTTACTTAACTTCTAACCATAATACATGTAAACATGAGTTTCCTTGCGAATATTGTGATAATATTTTCTTTTCAACAGCGCAAGAGAGAGATCATCACGAACGAGAAGTACATGAACCATTTAAGTGTTACCATTGTGATAGTTTCTATAGTGAAAATTGGCATATGCGGCAACATATTGAAGATAAACATGATTTAAAATGCCAATATTGTGATGATTCATTCGAAAGTTTTGAAGAGCAAAATATTCACGATATCAGTGTACATCTGACAATTAAGTGCCCTTATTGTGATAGATTATTTAGGGAAGATAAACAACTCCAGCAGCATGTTAATATTGAACATTATTTAGAATGCCGATATTGTGATGAAACATTTTTATACAATCGGGAACGATCATTTCATGAGAGATGCATACATCTTACAATTGAGTGCCCACACTGCGATACGTTATTCAGTGAAGAAAAGGATTTAGAAAAGCACAATCCTCTTTGTAAAAATTTATATGCTATAATAGGTAATAGGTCTGGTAATAGgagaaatttgaattattttaaatgtCCAAATTGTGTTAGATTGCTCAATTCAGATTTAGAGCTAGATACTCATATTCGAAACAAGCATCATTTTCAATGCCCGTATTGTAATAAATCATTTAAATCTTCTGAGGAGGTACATTCCCATGATAGCGACGTGCATTTAACCATTAAATGTCCACAATGCGAAAGTTTATTTAGATCAAATGAGCTACTTCGTCGGCATATTAAACTAAAACATAATTTTGAGTGTTTATATTGTGACGAATCTTTTAAATCCCTTCAGGAGACAGAAGCTCACGATAGAAGTGTACATCTAACCAATGCGTGCCCAGATCGTCAAAGGCTCTTCAGAGAAGATTTTTTGTTAGATAAACATGTTAAACTCAAACATAAAAGGAAAGGCGAAACGGGCGAAACCCAAAAGCCAGACCTTTCCTTTCCTTTAGTAGAGGTCGCTAAGTGA
Protein Sequence: MNAWYVCGSRFRTREDKTSHAVKHLTCRLCDVLFKSNDEKNIHDTEVHLKFECPHCTAIFTKNKKLKQHIKAEHGSVFSCLYCVDKFETKEKRNKHIKVKHLFDKCRYCEFSSIYQLVSRHMEIKHLLKCKYCSENFWPEQQDLNSHLIDHKCQNCDKFLIGHLIYRLYLTSNHNTCKHEFPCEYCDNIFFSTAQERDHHEREVHEPFKCYHCDSFYSENWHMRQHIEDKHDLKCQYCDDSFESFEEQNIHDISVHLTIKCPYCDRLFREDKQLQQHVNIEHYLECRYCDETFLYNRERSFHERCIHLTIECPHCDTLFSEEKDLEKHNPLCKNLYAIIGNRSGNRRNLNYFKCPNCVRLLNSDLELDTHIRNKHHFQCPYCNKSFKSSEEVHSHDSDVHLTIKCPQCESLFRSNELLRRHIKLKHNFECLYCDESFKSLQETEAHDRSVHLTNACPDRQRLFREDFLLDKHVKLKHKRKGETGETQKPDLSFPLVEVAK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -