g55899.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016212.1:156780-160371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 3.9e+02 4.5 2.9 1 23 37 59 37 59 0.97 2 14 0.00014 0.037 17.2 3.2 2 23 87 108 86 108 0.97 3 14 6.9e-05 0.018 18.1 0.5 5 23 116 135 114 135 0.96 4 14 2.9e-05 0.0077 19.3 0.4 1 23 141 164 141 164 0.96 5 14 0.00039 0.1 15.8 0.7 1 23 180 202 180 202 0.96 6 14 0.1 27 8.1 0.8 2 23 207 229 206 229 0.90 7 14 0.079 20 8.5 6.8 2 23 234 254 234 254 0.98 8 14 0.00099 0.26 14.5 0.1 2 23 262 283 261 283 0.97 9 14 0.39 1e+02 6.3 0.1 3 20 340 357 338 361 0.84 10 14 1.1 2.8e+02 5.0 0.8 2 23 366 387 365 387 0.91 11 14 0.049 13 9.2 0.1 1 23 392 414 392 414 0.97 12 14 0.00061 0.16 15.2 2.7 1 22 421 442 421 442 0.95 13 14 0.0055 1.4 12.2 6.9 1 23 445 468 445 468 0.96 14 14 1.3 3.5e+02 4.7 0.8 5 20 576 591 573 591 0.92
Sequence Information
- Coding Sequence
- ATGGATGTAAAAGTTAAAATTGAACATGAAGAAGTTGATCTTCCTGATCTCATAGATCCCCAATCCTTATCAGAAGAACATAGTGTCCCAAAACACGAAATCCATACCCATACCTGTTCTGAATGTCTAGAAGATTTCAATTGCGAATTCCTTCTTAAGGTTCATCAAATGATCCATGACAAAACCCAATACTGTTTTATTTGTAAACATAAGATTCACAATAAGTTTAAAGAACATGTGATGGACCGACACTTCAACCAATGTGATGTTTGTTTCAAAACTTtcaattacaaaaaaaacttgGTTCAGCATATGGAGCATCACACAGGAAATTTAAATTATATCAAGTGTGATAAAAGGTTTAGGCAAAGGGGCAGTTTGATTTCCCATATGAGATCATACCATGAAGGAGTTAAGCCATATGCTTGCAAGGAATGCGATGGAACTTTTACAACTTCTTCAAGCCTTGATAGGCATGTCAAAAATGTTCACAACCCCAACAATCCAAAACATTCGAAGAATGTTTTAACAAATGTATATGATTGCGATGTGTGCTCTACACAGTTTACAAACAAAACAGAACTGCAGTTGCACGAGAAAGAGCATTTTGAATCAAATAAATGTAAATTATGTGGTAAACAATATGGGGGGCTTAATTATCTTAAATTACACACATTTCTGCAACATTTCAAGACTGAAAGATGTACACATTGTGGCAAACTCTTTCATAAGAAAACTATCGAGAAACATTTGCGTTCACATGATAAGAAAAAGGTTATTACATATTGTGAGCTTTGTGATCAACCATTCGCTTCAAACTCAATACTTACAAGACATTTGGCGACACATGTCACTGCACAATGTAAACTTTGCGGAATGTATAACATAAAATCAATGAAAAACCATTTAGAAGCTCACAGAAGAGGTAAAGTACAAAAGTGTTCCATTTGTGCCAAGTTTGTAAGTGACATAGACGTGCATAATacaaacatacataaaaatacaGAATTTCTTTTTTGCACTGTGTGTCCTGAAAAGTTCACCACAATCGTTGAAAGGACTGCCCATAATGAAGAAGCACATTTTGAAATCATAAAATGCCCTAAGTGCAAGAAACAAATGGGTAACAGCAAATTGGTTGATCATGTTAGGAAGTATCATCCAGAATTGGTGTACGAATGTGACTACTGTGATCAAGTTTTATATGGCATAGCTACTTATAATGCTCATTTAGAATCACACAAAAAAGTATTCAAACCATACACATGTAACAAATGTCTGAAGAGCTATGAAAACGAAGCAAATCTGAAAAAGCATACCTGTACTGCTTTATATTACTGCCATTTATGCAACAAATATTATACATCCAGGCATAGTTATAACTCTCATATGATTCAACAACATAAACCAAACATCATAACTGCAACCTCTACTGAAAATTTGAACGCTCTAGAAATTGGCGGCAAAAAAATATACCAATGCAAGAAATGTTTCTTGACGATGTTTAAACTGAACCGTCCACATCATTGTCATCATTTGAGTGCTATTCTTGTTCGAAGGATACATCACAAGTGTAATTTGTGTGGGTTTTTGGGGGCTACGATGGGTGGGATGAGACGTCATTGTTTTAAATATCATGAAAATGAAACTGATTGGGTTACGATTAAAGCTGCTAAAGGATCTAATAAAAAACCACAGATGAGGAGAAACTTCATATATAAATGCCATTGTGGAAATGCATTTCAGTATGAAAGTTCACTCATCAAGCACAGGTAA
- Protein Sequence
- MDVKVKIEHEEVDLPDLIDPQSLSEEHSVPKHEIHTHTCSECLEDFNCEFLLKVHQMIHDKTQYCFICKHKIHNKFKEHVMDRHFNQCDVCFKTFNYKKNLVQHMEHHTGNLNYIKCDKRFRQRGSLISHMRSYHEGVKPYACKECDGTFTTSSSLDRHVKNVHNPNNPKHSKNVLTNVYDCDVCSTQFTNKTELQLHEKEHFESNKCKLCGKQYGGLNYLKLHTFLQHFKTERCTHCGKLFHKKTIEKHLRSHDKKKVITYCELCDQPFASNSILTRHLATHVTAQCKLCGMYNIKSMKNHLEAHRRGKVQKCSICAKFVSDIDVHNTNIHKNTEFLFCTVCPEKFTTIVERTAHNEEAHFEIIKCPKCKKQMGNSKLVDHVRKYHPELVYECDYCDQVLYGIATYNAHLESHKKVFKPYTCNKCLKSYENEANLKKHTCTALYYCHLCNKYYTSRHSYNSHMIQQHKPNIITATSTENLNALEIGGKKIYQCKKCFLTMFKLNRPHHCHHLSAILVRRIHHKCNLCGFLGATMGGMRRHCFKYHENETDWVTIKAAKGSNKKPQMRRNFIYKCHCGNAFQYESSLIKHR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -