g14081.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1115281-1124784[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.093 24 8.3 0.3 2 23 54 75 53 75 0.90 2 9 0.083 22 8.4 2.2 1 23 81 103 81 103 0.98 3 9 0.015 3.9 10.8 0.8 1 11 109 119 109 131 0.79 4 9 2.3e-05 0.006 19.6 0.9 1 23 137 160 137 160 0.96 5 9 0.00016 0.042 17.0 2.1 1 23 172 195 172 195 0.95 6 9 0.048 13 9.2 1.0 3 23 206 226 204 226 0.94 7 9 0.00021 0.055 16.6 1.5 1 20 232 251 232 254 0.93 8 9 1.5e-05 0.0039 20.2 2.0 1 23 260 282 260 282 0.98 9 9 0.0036 0.93 12.7 0.0 2 21 289 308 289 309 0.91
Sequence Information
- Coding Sequence
- atggGAGtagcacgtgaagaagaagaagttgatgatgatgatgatgccgGACGGACTCACATTTTAAGAGCCAAATCCAACTCAAAAACTTCCAAGTCCCGTCGTGAAAAGCCTAAGAAACCTACAGAAGTAGAACCAAATATACTAGACGAACCTCTATCATGCAACaactgctttaaaatattttttaataatgttgCTTTTGCTCTACATTCCATAGAACACAGCGAAGATCTTCTCTTCTCTTGTCATTTATGTTCTGTGAAGCTTAAGTCTGCTTATAGGATTGAAAAACACGTCAGAAGTCACGAGGGTTCGAAGAGGTACAAATGTGAGGTATGTGGGAAAGCTTTCAAGATAGGCACTCATGCTTTGGAGCATGTGTATTTCCACAATGGTGAAAAGCCTTTTCCTTGTGATATCTGCGGAAAAAGATTTATGTACAGTAGATTATTGAGTTCCCATAGGAGACTGTCACATTACACTGTACTTACCGGGAAGCCTTTGGTAAAATTCGACTGTAAAATCTGTGGAAAACACTATGAGTCAAATCAGGGCCTGCAACAACATTTGTACAGCAAACATAACGACAAAGGTATCGATAAATCTGTAATATGTGAGTTTTgtggtaaaaaaattaaaaacaagaaTAAGCTAAAGTTCCATTTAAGCATCCATACAGGTGATAAACCCTTTTCGTGTCTTGTTTGTCATAAAAAATTTGCTAAGAAGGACTTCCTACAAGCACACATGCCTgtacatactggagaaaagccaTTTTCGTGTCAGCAGTGTGGAAAGTCCTTTGCCCATAGGGCTCCGTTATGGTACCACAGAAAAACCCACACTGGTGAGAAACCCAATGTTTGTAAGATTTGTGGTAAAGGCTTCATTTCGAAACCAGCAATGGTCAGTCATGCTAAGAGTTGTGCTAAGACATGCAgtgtgataaataaaaattggGATTCGGAATAG
- Protein Sequence
- MGVAREEEEVDDDDDAGRTHILRAKSNSKTSKSRREKPKKPTEVEPNILDEPLSCNNCFKIFFNNVAFALHSIEHSEDLLFSCHLCSVKLKSAYRIEKHVRSHEGSKRYKCEVCGKAFKIGTHALEHVYFHNGEKPFPCDICGKRFMYSRLLSSHRRLSHYTVLTGKPLVKFDCKICGKHYESNQGLQQHLYSKHNDKGIDKSVICEFCGKKIKNKNKLKFHLSIHTGDKPFSCLVCHKKFAKKDFLQAHMPVHTGEKPFSCQQCGKSFAHRAPLWYHRKTHTGEKPNVCKICGKGFISKPAMVSHAKSCAKTCSVINKNWDSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -